Mercurial > repos > deepakjadmin > caret_tool1
changeset 6:62196348ab0a draft
Uploaded
author | deepakjadmin |
---|---|
date | Fri, 22 Jan 2016 11:56:31 -0500 |
parents | b62469661737 |
children | 44bb00c32ae3 |
files | tool1V2.xml |
diffstat | 1 files changed, 39 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool1V2.xml Fri Jan 22 11:56:31 2016 -0500 @@ -0,0 +1,39 @@ +<tool id="AdsmkdqaddodfdalV2" name="Prepare input file"> +<description> +This Tool Converts Input csv File into RData Which Is Further Used for Model Building + </description> + <!--command interpreter="bash">step1.sh $file1 $output1 </command--> + <requirements> + <requirement type="set_environment">CARET_TOOL1_PATH</requirement> + <requirement type="set_environment">R_ROOT_DIR</requirement> + <requirement type="package" version="3.2.0">R</requirement> + </requirements> + <command interpreter="Rscript">csv2rdatatrain.R $file1 $RData </command> + <inputs> + <param format="csv" name="file1" type="data" label="Select file containing training data" help="CSV format" /> + </inputs> + <outputs> + <data type="data" name="RData" label="Input.RData" /> + </outputs> +<help> +.. class:: infomark + +**Input "csv file" format must be as given below :** + + +"",feature1,feaure2,feature3,..,activity + + +cpd1,623,0.4,3.4,..,Active + +cpd2,234,0.9,5.6,..,Inactive + +cpd3,567,0.5,3.14,..,Active + +cpd4,231,0.1,1.2,..,Inactive + +here "cpd" stands for name or id of a compound. It is rowname with no column header. + + +</help> +</tool>