Mercurial > repos > dchristiany > frogs_data_manager

diff data_manager_conf.xml @ 3:33553ca873df draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit c3ff1475af0e964a0c61458b66e2744c903d8d3d-dirty
author dchristiany
date Wed, 02 Oct 2019 11:33:30 -0400
parents 13f4cbb20c31
children 95d5191f1dc4
line wrap: on
line diff
--- a/data_manager_conf.xml	Wed Oct 02 11:21:04 2019 -0400
+++ b/data_manager_conf.xml	Wed Oct 02 11:33:30 2019 -0400
@@ -1,15 +1,16 @@
 <?xml version="1.0"?>
 <data_managers>
-    <data_manager tool_file="data_manager/data_manager.xml" id="frogs_data_manager">
+    <data_manager tool_file="data_manager/data_manager.xml" id="f_data_manager">
         <data_table name="frogs_db">
             <output>
                 <column name="value"/>
                 <column name="name" />
                 <column name="path" output_ref="output" >
                     <move type="directory">
+                        <source>#echo "/".join(str(${path}).split('/')[:-1])#</source>
                         <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">frogs_db</target>
                     </move>
-                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/frogs_db/${value}.fasta</value_translation>
+                    <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/frogs_db/#echo "/".join(str(${path}).split('/')[-2:])#</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
             </output>