Mercurial > repos > dchristiany > frogs_data_manager
changeset 3:33553ca873df draft
planemo upload commit c3ff1475af0e964a0c61458b66e2744c903d8d3d-dirty
| author | dchristiany |
|---|---|
| date | Wed, 02 Oct 2019 11:33:30 -0400 |
| parents | 13f4cbb20c31 |
| children | 95d5191f1dc4 |
| files | data_manager/FROGS_data_manager.xml data_manager_conf.xml |
| diffstat | 2 files changed, 4 insertions(+), 3 deletions(-) [+] |
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--- a/data_manager/FROGS_data_manager.xml Wed Oct 02 11:21:04 2019 -0400 +++ b/data_manager/FROGS_data_manager.xml Wed Oct 02 11:33:30 2019 -0400 @@ -1,4 +1,4 @@ -<tool id="FROGS_data_manager" name="FROGS Data manager" version="2019.10.02.2" tool_type="manage_data"> +<tool id="f_data_manager" name="FROGS Data manager" version="2019.10.02" tool_type="manage_data"> <requirements> </requirements> <command detect_errors="exit_code"><![CDATA[
--- a/data_manager_conf.xml Wed Oct 02 11:21:04 2019 -0400 +++ b/data_manager_conf.xml Wed Oct 02 11:33:30 2019 -0400 @@ -1,15 +1,16 @@ <?xml version="1.0"?> <data_managers> - <data_manager tool_file="data_manager/data_manager.xml" id="frogs_data_manager"> + <data_manager tool_file="data_manager/data_manager.xml" id="f_data_manager"> <data_table name="frogs_db"> <output> <column name="value"/> <column name="name" /> <column name="path" output_ref="output" > <move type="directory"> + <source>#echo "/".join(str(${path}).split('/')[:-1])#</source> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">frogs_db</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/frogs_db/${value}.fasta</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/frogs_db/#echo "/".join(str(${path}).split('/')[-2:])#</value_translation> <value_translation type="function">abspath</value_translation> </column> </output>