Mercurial > repos > davidvanzessen > ig_blast_merge
changeset 4:b80b296f0635 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Mon, 02 Dec 2013 11:01:54 -0500 |
| parents | 39ff573fed64 |
| children | 491edc4cfa62 |
| files | igblastmerge.xml |
| diffstat | 1 files changed, 13 insertions(+), 11 deletions(-) [+] |
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--- a/igblastmerge.xml Mon Dec 02 11:01:49 2013 -0500 +++ b/igblastmerge.xml Mon Dec 02 11:01:54 2013 -0500 @@ -1,20 +1,22 @@ <tool id="igblastmerge" name="IgBlastMerge" version="1.0"> - <description>Converting one or more "igBLASTreport parser" outputs for "VDJ Blast plot"</description> + <description>Multisample</description> <command interpreter="python"> - igblastmerge.py - --input - #for $i, $f in enumerate($files) - ${f.file} - #end for - --id - #for $i, $f in enumerate($files) - $(f.id) + igblastmergems.py + --input + #for $i, $f in enumerate($patients) + $f.id + #for $j, $g in enumerate($f.samples) + ${g.sample} + #end for + #end for --output $out_file </command> <inputs> - <repeat name="files" title="File" min="1" default="1"> - <param name="file" format="tabular" type="data" label="Data to Process" /> + <repeat name="patients" title="Patients" min="1" default="1"> + <repeat name="samples" title="Sample" min="1" default="1"> + <param name="sample" format="tabular" type="data" label="Sample to Process" /> + </repeat> <param name="id" type="text" label="ID" /> </repeat> </inputs>