changeset 5:491edc4cfa62 draft

Deleted selected files

--- a/igblastmergems.py	Mon Dec 02 11:01:54 2013 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,52 +0,0 @@
-import sys
-# error
-def stop_err( msg ):
-	sys.stderr.write( "%s\n" % msg )
-	sys.exit()
-
-# main
-def main():
-    args = sys.argv[2:-2]
-
-    try:
-        o = open(sys.argv[-1], 'w')
-        i = open(args[1], 'r')
-        separator = "\t"
-        newline = "\n"
-        line = i.readline()
-        #write the header
-        o.write(line[:line.rfind(newline)] + separator + "Sample" + separator + "Replicate" + newline)
-        i.close()
-
-        current = 1
-        sampleID = args[0]
-        count = 1
-
-        while True:
-            print str(o)
-            f = open(args[current], 'r')
-            line = f.readline()
-            line = f.readline()
-            while line:
-                o.write(line[:line.rfind(newline)] + separator + sampleID + separator + str(count) + newline)
-                line = f.readline()
-            f.close()
-
-            if current >= (len(args) - 1):
-                break
-            if args[current + 1].find("/") is -1:
-                sampleID = args[current + 1]
-                current += 1
-                count = 1
-            else:
-                count += 1
-            current += 1
-        o.close()
-
-    except Exception, ex:
-        stop_err('Error running new_column.py\n' + str(ex))
-    sys.exit(0)
-
-if __name__ == "__main__":
-	print sys.argv
-	main()