Mercurial > repos > davidvanzessen > baseline_bayesian_estimation

changeset 11:e160483ee900 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Thu, 25 Jun 2015 06:12:24 -0400
parents 82016fd934c8
children 44209adaca42
files wrapper.sh
diffstat 1 files changed, 11 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/wrapper.sh	Thu Jun 25 06:12:17 2015 -0400
+++ b/wrapper.sh	Thu Jun 25 06:12:24 2015 -0400
@@ -39,11 +39,20 @@
 do
 	f=$(file $current)
 	zipType="Zip archive"
-	if [[ "$f" == *"$zipType"* ]]
+	if [[ "$f" == *"$zipType"* ]] || [[ "$f" == *"XZ compressed data"* ]]
 	then
 		id=${IDs[$count]}
 		echo "id=$id"
-		unzip $current -d $PWD/$id/ >> $PWD/unziplog.log
+		if [[ "$f" == *"Zip archive"* ]] ; then
+			echo "Zip archive"
+			echo "unzip $input -d $PWD/files/"
+			unzip $current -d "$PWD/$id/"
+		elif [[ "$f" == *"XZ compressed data"* ]] ; then
+			echo "ZX archive"
+			echo "tar -xJf $input -C $PWD/files/"
+			mkdir -p "$PWD/$id/files"
+			tar -xJf $current -C "$PWD/$id/files/"
+		fi
 		summaryfile="$PWD/summary_${id}.txt"
 		gappedfile="$PWD/gappednt_${id}.txt"
 		filtered="$PWD/filtered_${id}.txt"