# HG changeset patch
# User davidvanzessen
# Date 1435227144 14400
# Node ID e160483ee900131146f286fe623dfb58811bc7d6
# Parent  82016fd934c8df8c5b9456a4e1b05c01b7b52d8e
Uploaded

diff -r 82016fd934c8 -r e160483ee900 wrapper.sh
--- a/wrapper.sh	Thu Jun 25 06:12:17 2015 -0400
+++ b/wrapper.sh	Thu Jun 25 06:12:24 2015 -0400
@@ -39,11 +39,20 @@
 do
 	f=$(file $current)
 	zipType="Zip archive"
-	if [[ "$f" == *"$zipType"* ]]
+	if [[ "$f" == *"$zipType"* ]] || [[ "$f" == *"XZ compressed data"* ]]
 	then
 		id=${IDs[$count]}
 		echo "id=$id"
-		unzip $current -d $PWD/$id/ >> $PWD/unziplog.log
+		if [[ "$f" == *"Zip archive"* ]] ; then
+			echo "Zip archive"
+			echo "unzip $input -d $PWD/files/"
+			unzip $current -d "$PWD/$id/"
+		elif [[ "$f" == *"XZ compressed data"* ]] ; then
+			echo "ZX archive"
+			echo "tar -xJf $input -C $PWD/files/"
+			mkdir -p "$PWD/$id/files"
+			tar -xJf $current -C "$PWD/$id/files/"
+		fi
 		summaryfile="$PWD/summary_${id}.txt"
 		gappedfile="$PWD/gappednt_${id}.txt"
 		filtered="$PWD/filtered_${id}.txt"