Mercurial > repos > dave > pipelign
view test-data/pipelign-out1.fasta @ 0:9a3a2e04f47a draft default tip
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| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
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>K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1 ------------------------------------------------------------ ------------------------------------------------------------ -------------GATCCTGC----------------------------------ATATA AGCAGCAGCTTTTTGC-CTTTACTGGTTCTCTCTGGTTAGACCAGATCTGAGCCTGGG-- ----------------------------------- >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1 ------------------------------------------------------------ ------------------------------------------------------------ -------------AGCAGAATAGGCGTTACTC-----GACAGAGGAGAGCAAGAAATGTA GCCAGTAGATCCTAGA-CTATA-----------------------------GCCCTGG-- ----------------------------------- >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1 ------------------------------------------------------------ ------------------------------------------------------------ ------------CAGATACCT----------------------------------AAATG ATCAACAGCTCCTGGG-GATT-TGGGGTTGCTCTGGAAAACTCATTTGCACCCCTGCT-- ----------------------------------- >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1 ---------------------------------------------GTCTGGGGCATCAAG CAGCTCCAGGCAAGAATGCTGGCTGT---------------------------------- --------GG-AAAGATACCT----------------------------------AAAGG ATCAACAGCTCC------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1 ---------------------------------------------TCCTGACTC------ CAATACTGTAGGAGATTCC----------------------------------------- -----------ACCAATATTT----------------------------------GAGGG CTTCCCACCCCCTGCG-TCCC-AGAAGTT------------------------------- ----------------------------------- >K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1 ------------CGAGCAAGCTTCACAGGAGTTAAAAAATTGGATGACAGAAAC-CTTGT TGGTCCAAAATGCGAACCCAGAT------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_1717_2240_0_0_0_2_0_0_4b/1 ----------------------TCACAGGAGGTAAAAAATTGGATGACAGAAAC-CTTGT TGGTCCAAAATGCGAACCCAGATTGT---------------------------------- -----------AAGACTA------------------------------------------ ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1 ------------------------------------------------------------ ------------------------------------------------------------ -----------------ATTT--------------------------TAAAAGCATTGGG ACCAGCGGCTAC----------ACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAT GAC-------------------------------- >K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1 --------------------------------------------TGACAGAAAC-CTAGT TGGTCCAAAATGCGAACCCAGATTGT---------------------------------- -----------AAGACAATTT--------------------------TAAAAGCATTGGG ACCAGC------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1 -----------------------------------------------------CACTTAT TAAAAGAAAAGGGGGGACTGGA-------------------------------------- -----------AGGGCTAATT--------------------------CACTCCCAAAGAA GACAAGATATCCTTGA-TC----------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1 -----------------------------------------------------------T TAAAAGAAAAGGGGGGACTGGA-------------------------------------- -----------AGGGCTAATT--------------------------CACTGCCAAAGAA GACAAGATATCCTTGA-TCTGAGGA----------------------------------- ----------------------------------- >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1 ------------------------------------------------------------ ------------------------------------------------------------ -------------GGCTAATT--------------------------CACTCCCAACGAA GACAAGATATCCTTGA-TCTGTGGATGTACCACCCACAAGGCTACTTCCC---------- ----------------------------------- >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1 ------------------------------------------------------------ --------ACAACGGAATTGG--------------------------------------- -------------AGGAAATG--------------------------AACCAGTAGATAA ATTAGTCAGTGCTGGA-ATCAGGAAAGTACTATTTTT----------------------- ----------------------------------- >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1 ------------------------------------------------------------ ----------AATAGTACTTT--------------------------------------- -------------CCTGATTC--------------------------CAGCACTGACTAA ATTATCTACTTGTTCA-TTTCCTCCAATTCCTTTGTGTG--------------------- ----------------------------------- >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1 ------------------------------------------------------------ -----GAAGAAGCGGAGACAGC-------------------------------------- ---------G-ACGAAGAGCT-----------------------CATCAGAACAGTCAGA CTCATCAAGCTTCTCA-ATCAAATCAG--------------------------------- ----------------------------------- >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1 --------------------------------------------------------CTAT GGCAGGAAGAAGCGGAGACAGC-------------------------------------- ---------G-ACGAAGAGCT-----------------------CATCAGAACAGTCAGA CTCATCAAGCTTCTGT-A------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1 ------------------------------------------------------------ -----------------ACAGC-------------------------------------- ---------G-ACGAAGAGCT-----------------------CATCAGAACAGACAGA CTCATCAAGCTTCTCT-ATCAAAGCAGTAAGTATTACAT--------------------- ----------------------------------- >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1 ------------------------------------------------------------ -----------AAGCTTGTGTA-------------------------------------- -----------ATTGTTAATT-----TCTCT-------------GTCCCACTCCATCCAG GTCGTGTGATTCCAAC-TCTGTTCCAG-------------------------AG------ ----------------------------------- >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1 ------------------------------------------------------------ -----------AAAATTTCAAA-------------------------------------- ------------------------------------------------------AATTGG GCCTGAAAATCCATAC-AATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTA------ ----------------------------------- >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1 ------------------------------------------------------------ ------------------------------------------------------------ ---------------AGCCAT--------------------------------------- ---------TGCTCTC-CAATTACTGTGATATTTCTCATGTTCATCTTGGGCCTTAACTA TTCCATCTAAAAAT--------------------- >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1 ------------------------------------------------------------ ------------------------------------------------------------ ---------------TGATTT-GTTGTGTCAG------------------TTAGGGTGAC AACTTTTTGTGTTCCT-CTATTAGTAACATATCCTGCTTTTCC----------------- ------------TA--------------------- >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1 ------------------------------------------------------------ ------------------------------------------------------------ ---------G-AGGGGGAGTT-GTTGTCTGTACCCCAGACCTGAAGCTCTCTTCTTGTGG GGCTGTTGGCTCTGGT-CTGCT-------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1 ------------------------------------------------------------ ------------------------------------------------------------ -----TTCTG-AGGGGGAGAT-GTTGTCTCTAGCCCAGACCTGAAGCTCTCTTCTGGTGG GGCAGTTGGCTCTGGT-C------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1 ------------------------------------------------------------ ------------------------------------------------------------ -------------------CT-CTAGTGTCCATTCATTGTGTGG------CTCCCTCTGT GGCCCTTGGTCTTCTT-GGGCTTGTTCCATCTCTCCT----------------------- ----------------------------------- >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1 ------------------------------------------------------------ ---------ATAGAGCTTCCTTTAGTTGCCCCC-----------------------CTAT CTTTATTGTG-ACGAGGGGAC-GTTGCCAAAGAGT--GACCTGAGG-------------- ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1 ------------------------------------------------------------ ------------------------------------------------------------ ----------------------GAAGTCTTGAGTTCTCTTATTAA-----GTTCTCTGAA ATCTACTAATTTTCTC-CATTTAGTACTGTCTTTTTTC---------------------- ----------------------------------- >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1 ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------TTCTCTGAA ATCTACTAATTTTCTC-CATTTAGTACTGTCTTTTTTCTT------TATGGCAAATACTG GAGTAT------TG--------------------- >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------TGCCAAGGATCC------------------------ GTTCACTAATCGAATG-GATCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT- ----------------------------------- >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1 ------------------------------------------------------------ ----------GGTGATATGGGCTGATGTACC-------------ATTTGCCCCTGGATGT TCTGCACTAT-AGGGTAATTTTGGCTGACCTGAT-------------------------- ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1 ------------------------------------------------------------ ------CAGAAGTGATA----------------------------------CCCATGTTT TCAGCATTAT-CAGAAGGAGCCACCCCACAAGATTT------------------------ -AAACACCATGCTAAA-------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1 ------------------------------------------------------------ ------------------------------------------------------------ ------TTAT-CAGAAGGAGCCACCCCACAAGATTT------------------------ -AAACACCATGCTACACCCAGTGGGGGGACATCAAGCAGCCA------------------ ----------------------------------- >K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1 ------------------------------------------------------------ --------------------------------------------------------GTTT TCAGCATTAT-CAGAAGGAGCCACCCCACAAGATTT------------------------ -AAACACCATGCTAAACACAGTGGGGGGACAT---------------------------- ----------------------------------- >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1 ------------------------------------------------------------ ----------TGTAACACC------------------------------TCAGTCATTAC ACAGGCCTGT-CCAAAGGTATCCTTTGAGCCAATTC------------------------ -CCATACATTATTGTG-------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1 ------------------------------------------------------------ ----------ATGTATG------------------------------------------- --GGAATTGG-CTGAAAGGATACCTTTGGACAGGCC------------------------ -TGAGTAATGACTGAG----GTGTTACAACTTGTC------------------------- ----------------------------------- >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1 ------------------------------------------------------------ ------------------------------------------------------------ --------GA-CCAGCAAAGCACCTC---------T----GGAAAGGTGAAGGGGCAGTA GTAATACAAGATAATA-GTGACATAAAAGTAGT--------------------------- ----------------------------------- >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1 ------------------------------------------------------------ ------------------------------------------------------------ ----------------------------------------GGAAAGGTGAAGGGGCAGTA GTAATACAAGATAATA-GTGACATAACAGTAGTGCGAAGAAGAAAAGCAAA--------- ----------------------------------- >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1 ------------------------------------------------------------ ------------------------------------------------------------ ----------------GGGG--------------------GGAACAGTGCAGGGGAAAGA ATAGTA-GACATAATA-GCAACAGACATACAAACTAAAGAATTACAAA------------ ----------------------------------- >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1 ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------TTTTATGGTTCATAA TCCACTCCATGTACTG-GTTCTTTTAGAATCTCTCATTTTTCTGCCCGTTCTAGCT---- ----------------------------------- >K03455|HIVHXB2CG_3441_3888_1_0_0_0_0_0_5c/1 ------------------------------------------------------------ ------------------------------------------------------------ ----------------GAAGCAGAGCTAGAACTGGC----AGAAAACAGAGAGATTCTAA AATAACCAGTACATGG-AGTGTATTATGACC----------------------------- ----------------------------------- >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1 ------------------------------------------------------------ --------CAGAGGAGGTCT---------------------------------------- -------------CTCGACGCAGGACTCGGCTTGCT----GAAGGGCGCACGG----CAA GAGGCGAGGGGCGGCG-ACT---------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_667_1161_0_0_0_1_0_0_37/1 ------------------------------------------------------------ --GGAAACCAGAGGAGCTCT---------------------------------------- -------------CTCGACGCAGGACTCGGCTTGCT----GAAGCGCGCACGG----CAA GAGGCGAGGGGCG----------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1 ------------------------------------------------------------ -----------------------------------------------------------C GGGCACACAC-TACTTGAAGCACTCA---------------------------------- -AGGCAAGCTTTATTG-AGGCTTAAGCAGTGGGTTCCCTAGTTAGC-------------- ----------------------------------- >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1 ------------------------------------------------------------ ------------------------------------------------------------ -------------CTTGAAGCACTCA---------------------------------- -AGGCAAGCTTTATTG-CGGCTTAATCAGTGGGTTCCCTAGTTAGCCAGAGAGCT--CCC A---------------------------------- >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1 ------------------------------------------------------------ ------------------------------------------------------------ ---------------TGCTGCTGGCT---------------------------------- -CAGCTCGTCTCATTC-ATTCCCTTACAGTAGGCCATCCAATCACACTACATATTGACCA C---------------------------------- >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1 ------------------------------------------------------------ ------------------------------------------------------GC---T GCTCCCACCC-TATCTTGTGCTGGCT---------------------------------- -CAGCTCGTCTCATTG-TTTCCCTTACAGTAGGCCATCCAATCA---------------- ----------------------------------- >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1 ------------------------------------------------------------ ------------------------------------------------------CTATGT TTACTTCTAA-T-CCCGAATCCTGCA---------------------------------- -AAGCTAGATAAATTG-CTTGTAACTCAGT----CTTCTGATTTGT-------------- ----------------------------------- >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1 ------------------------------------------------------------ TCCTCTGTCGAGTAACGCCTATTCT----------------------------GCTATGA CGACACCCAA-T-TCTGAAACTGGAT---------------------------------- -AAAC---AGCAGTTG-TT----------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1 ------------------------------------------------------------ ------------------------------------------------------------ ------------------TAGGAACCAAAGA--------------------------AAG ATAGTTAAGTGTTTCA-ATTGTGGCACAGAAGGGCACACAGCCAGAAATTGCAGG----- ----------------------------------- >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1 -------------TAAGGTGTTTTAC-----------------------------TAAAC TTTTCCATGTTGTAATCCTCATCCT----------------------------GTCTCCT TGCCACACAA-T-CATCACCTG-------------------------------------- ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1 ------------------------------------------------------------ ------------------------------------------------------GCCACA GAGGGAGCCA-CACAATGAATGGACA---------------------------------- -CTATAGCTTTTAGAG-GAGCTTAAGAATGAAGCT-----GTTAGA-------------- ----------------------------------- >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1 ------------------------------------------------------------ -------TAACGCCACCTTTGCCTA--------GTGTTACGAAACTGCCAGAGGA----- -----------TAGATGGAACAAGCCC----------------------CAGAAG-ACGA AGGG-------------------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1 ------------------------------------------------------------ -------AGGGATTA-------------------TGGAAAACAGATGGCAGGTGATGATT GTGTGGCAAT-TAGACAGGATGAGGAT----------------------TAGAAC-ATG- ---G-------------------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1 ------------------------------------------------------------ ------------CTACCTCTTCTTC---------TGCTAGACTGCCATTTAACAG----- -----------CAGTTGAGTTGATACTACT---------------GGCCTAATTCCATG- -TGT-------------------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1 ----------------------------------------------------------TT AGGCCAGTAGTATCAACTCAACTGC---------TGTTAAATGGCAGTCTAGCAG----- -----------AAGAAGAGGTAGTAAT----------------------TAGATC----- ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1 ------------------------------------------------------------ ----GTGGAGA---------------------------GAGAGACAGAGACAGAT---CC ATTCGATTAG-TGAACGGATCC---------------------------TTGGCACTTAT CTGGGACGATCT------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1 ------------------------------------------------------------ ----TCCGAAGATCG-------------------TCCCAGATAAGTGCCAAGGAT---CC GTTCACTACT-CGAATGGATCTGA--C---------------------TCTGTCTCT--- ---------CTC------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1 ------------------------------------------------------------ ----CCAAGTA------------------------TCCCCATAAGTTTCATAGAT---AT GATGCCCTAA-GCCATGGAGCCAAATC---------------------CTAGGAAAATGT CTA--------------------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1 ------------------------------------------------------------ ---------TA------------------------TCCCCATAAGTTTCATCGAT---AT GTTGCCCTAA-GCGATGGAGCCAAATC---------------------CTAGGAAAATGT CTAAC----AGC------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1 ------------------------------------------------------------ --------TGC------------------------TCTGAAGAAAATTCCCTG------- GCCTTCCCTT-GTAGTAAGGCCATATC---------------------TTCCCTAAAAAA TTAGC----CTGTCT--------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -----CAGGATTAA--------CTGCGAATCTTTCTAGCTCCCTTGTTGCCCATACTATA TGTTTTAATTTATATTTT------------TTCTT >K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1 ------------------------------------------------------------ -------------AATAGCAATT------------------------------------- ---------------------------------------------------------TGT ACAAGCAGTTTTAGGC-TGACTTCGTGGATGCTTCCAGGGCTCTCGTC----------TA GGATCAA---------------------------C >K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1 ------------------------------------------------------------ ------------------------------------------------------------ ---------------------------------------------------------TGT GTTCAGCTGTACTATT-ATGGTTATAGCATTTT-----CCGTGAAATTGACAGATCTAAT TACTACCTCTTCT---------------------- >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1 ------------------------------------------------------------ ------------------------------------------------------------ -----------------------------------------------------------T TCTGGGAAGTTCAATT-AGGAATACCACATCCC-----GCAGGGTTAAAAAAGAAAAAAT CAGTAACAGTACTGG-------------------- >K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------TCCA-AGCCCTGTCTTATTCTTCTAGGTATGTGGCGCATAGCTCTACA AGCTCCTTGTACTACTTCAATAA------------ >K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1 ------------------------------------------------------------ --------------ACC-CATCT------------------------------------- ---------------------------------------------------------TAT AGCAAAATCCTTTCCA-AGCCCTGTCTTATTCTTCTAGGTATGTGGCGAATAGCTCTACA ----------------------------------- >K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1 ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ -------------------------CTACTATTGCTACTAATGGTATAGGTTGCGTTACA TGTACTACTTACTGCTTTGATAGAGAAGCTTGATG >K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1 ------------------------------------------------------------ -------------TCTA-CATAG------------------------------------- ---------------------------------------------------------TCT CTAAAGGGTTCCTTTG-GTCCTTGTCTTATGTC------CAGAATGCTGGTAGGGCTATA CATTC------------------------------ >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1 ------------------------------------------------------------ ------------------------------------------A-----ATTGTGGGTCAC AGTC------------TATTATGGGGTACCTGTGTG----GCAGGAAG------------ -----CAACCACCAC--------------TCTATTTTGTGC--------ATC-------- ----------------------------------- >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1 ------------------------------------------------------------ ------------------------------------------GGAGCTAGAACGATTCGC AGTT------------AATCCTGGCGTGTTAGAAAC----ATCAGAAGGC-------TG- -TAGACAAATACTG-----------------------------------GGA-------- ----------------------------------- >K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1 -------------------------T---------------------------------- ---TTGATTGACTAACTCTGATT-----CACTTTGATCTTGTAGTGCTTGAATGATTCCT AATG------------CATATTG-TGAGTC------------------------------ ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1 -------------------------C-----------------------------TTCTT CTGTTAGTGGTATTACTTCTGTTAGTGCTTTGGTACCTCTAAGGAGTTTACATAATTGCC TTAC-------------------------------------------------------- ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1 ------------------------------------------------------------ -----------------------------------------AGGATTTTACATAATTGCC TTAC------------TTAAATCCCTGGGT---------------AAATC-------TGA CTTGCCCAATTCAAT--------------TTCCCCA-------------CTA-------- ----------------------------------- >K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1 ------------------------------------------------------------ --------------------------------------ACTTTATATTTATATAATTCAC TTCT------------CCAATTGTCC---------------------------------- ----CTCATCTCTCC--------------TCCTCCAGGTCTGAAGATCTCGG-------- ----------------------------------- >K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1 -------------------------T-----------------------------CTTTG CCTTGGTTGGAGCAACTCCTAATGGTTGAATTTTTACTACTTTATATTTATATAATTCCC TTCT-------------------------------------------------------- ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1 ------------------------------------------------------------ ---TCGGAGTCATTGTTGCTATTACCACCATCTTTTGTTCATAGCAGCCCTGTAATATTT GATT-------------------------------------------------------- ------------------------------------------AACATC-TAA-------- ----------------------------------- >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1 ------------------------------------------------------------ -------------------------------------------------GATGGTTTTAT AGACATCACT-ATGAAAGCCCTCATCCAAGAAAAAG----TTCAGAAGTA-------CA- -CATCCCACTAGG----------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1 ------------------------------------------------------------ -----------------------------------------------------AATTTAT CAAGAGCCAT-TTAAAAATCTGAAAACAGGAAAATA----TGCAAGAATGAGGGGTGCC- -CACACTAAT-------------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1 ------------------------------------------------------------ --------CCCCATATTACTATGCTTTCTGTGGTTAATTTTTGCACTGCCTCTGTTAATT GTTT-------------------------------------------------------- ------------------------------------------TACATC-ATTAGTGT--- ----------------------------------- >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1 ------------------------------------------------------------ --------------------------------------------AGTTCATGTATCCAGT GGATATATAG-AAGCAGAAGTTATTCCAGCAGAAAC---------------AGGGGCTG- -AAACAGCATAT------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1 -------------------ATTGTAC-----------------------------ACATT TAGAATGAAAAGTTATCCTGGTA-------------------GCAGTTCATGTAGCCAGT GGATATATAG-AAGCAGA------------------------------------------ ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1 ------------------------------------------------------------ ------------------------------------------------------------ ---TATAAAG-ACGCAGAAGTTATTCCAGCATACAC---------------AGGGCAGG- -AAACAGCATATTTTC-TTTTCAAATTAG-----------------------------CA G---------------------------------- >K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1 ------------------------------------------------------------ ------------------------------------------------------------ ---TGCTAA---------------------------------------------TTTTA- -AAAGACAATATTCTG-TTTCCTGCCCTGTTTCTGCTGGAATAACTTCTGCTTCTATATA T---------------------------------- >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1 ------------------------------------------------------------ ---------GC-CTGCAT------------------------------------------ ---------G-GAATGGATGACCCGGAGAGAGA--------------------------- ------AGTGTTA-----------------GAGTGGAGGTTTGAGAGCCACCTAGCAATT C------A--------------------------- >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1 ------------------------------------------------------------ ---------GTACTTTCT------------------------------------------ ---------A-TAGTGAATAGAGTTAGGCAGGT--------------------------- ------ATATTCA-----------------CCATTATCGTTTGAGACCCACCTCCCAACC C---------------------------------- >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1 ------------------------------------------------------------ -------CAAC-CTATACCAA--------------------------------------- ---TAG-TAG-CAATAGTAGCATTAGTAGTAGC--------------------------- ------AATAATA-----------------ATAGCAATAGTTGAGTGGTCCA-------- ----------------------------------- >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1 ----------------AGTAAGTAGT-----------------------------ACCTG TAAC--GCAAC-CTATACCAA--------------------------------------- ---TAG-TAG-CAATAGTAGCATTAGTAGTAGC--------------------------- ------ACTAATA-----------------AT---------------------------- ----------------------------------- >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1 ------------------------------------------------------------ ---------CACCCATCC------------------------------------------ ---------A-AAGGAATTGAGGTTCTTTCTGA--------------------------- ------TGTTTTT-----------------TGTCTGGTGTGGTAAGTCCCCACCTCGACA G---------------------------------- >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1 ACAGTAATTGGAGAGCAATGGCTAGT-----------------------------GATTT TAACCTGCCAC-CTGTAGTAG--------------------------------------- ---CAA-AAG-AAATAGTAGCCCG------------------------------------ ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1 ------------------------------------------------------------ -------------TATGGTAC--------------------------------------- ---CAGTTAG-AGAAAGAACCCCTAGTAGGAGC--------------------------- ------AGAAACC-----------------TTCTATGTAGATGGGGCAGCTA-----ACA G---------------------------------- >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1 CT---------------------------------------------------------- ------------TTATATTTT--------------------------------------- ---TTCTT---------ACCCCCTGGCCTTAAC--------------------------- ------CGAATTT-----------------TTTCCCATCGATCTAATTCTCC-----CCC GC--TTAA--------------------------- >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1 ------------------------------------------------------------ ---ACAGTAGAAAAATTCCCC--------------------------------------- ---TCCACCA-TTAAAACTGTGGTTACAATATC--------------------------- -----TGGGTCCC-----------------CTCCTGAGGATTGGT--------------- ----------------------------------- >K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1 ------------------------------------------------------------ ---ACAGTAGAAAAATTCCCC--------------------------------------- ---TCCACAA-TTAAAACTGTGGTTACAATTTC--------------------------- -----TGGGTCCC-----------------CTCCTGAGGATTGCT--------------- ----------------------------------- >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1 --------ATC----------CTCAT-----------------------------GCATC TGTTCTACCATGTCATTTTTC--------------------------------------- ---CACATGT-TAAAATTTTCTGTCACATTTAC--------------------------- ------CAATACT----------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1 --------TT-----------------------------------------------GGT AAATGTGACAGAAAATTTTAA--------------------------------------- ---CATGTGG-AAAAATGACATGGTAGA---AC--------------------------- ------AGATGCA-------------------------------------TGAGGATATA A---------------------------------- >K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1 ---------------------------------------------------------GGT AAATGTGACAGAAAATTTTAA--------------------------------------- ---CATGTGG-AAAAATGACATGGTAGA---AC--------------------------- ------AGATGCA-------------------------------------TGAGGATATA AT-----C--------------------------- >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1 ------------------------------------------------------------ ------------------------------------------------------------ ---------T-TAAAATTTTCTGTCACATTTAC--------------------------- ------CAATACTA---------------CTTCTTGTGGGTTGGGGTCTGTGGGTACACA GGCATGTG--------------------------- >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1 TCCCTGTTCG-----------------------------------------------GGC GCCACTGCTAGAGATTTTCCA--------------------------------------- ---CACTGAC-TAAAAGGGTCTGAGGGA---TCT-------------------------- ----CTAGTTACC----------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1 ----AAGTGCAAGCAATCTGATTCAC-----------------------------CCGAT TTCTTCCAATTATGATGACAGGTGT----------------------------AGGTCCT ACTAATACAG-T------------------------------------------------ ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1 ------------------------------------------------------------ ------------------------------------------------------------ --ATAACCACAGAAAGCATAGTAATATGGGGAAAGA----CTCCTAAATTTAAACTGCC- -CATACAAAAGGAAAC-------------------------------------------- ---------------------------AT------ >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1 TTT--------------------------------------------------------- ------------------------------------------------------------ -----------TTCAGTTCGCTTAGATGAAGACTTC----AGGCAGTATACTGCATTTAC CATACCTAGTATAAAC-AATGAG------------------------------------- -----------------------------------