Mercurial > repos > dave > pipelign
diff test-data/pipelign-out1.fasta @ 0:9a3a2e04f47a draft default tip
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| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/pipelign-out1.fasta Mon Jun 10 16:04:10 2019 -0400 @@ -0,0 +1,600 @@ +>K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1 +------------------------------------------------------------ +------------------------------------------------------------ +-------------GATCCTGC----------------------------------ATATA +AGCAGCAGCTTTTTGC-CTTTACTGGTTCTCTCTGGTTAGACCAGATCTGAGCCTGGG-- +----------------------------------- +>K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1 +------------------------------------------------------------ +------------------------------------------------------------ +-------------AGCAGAATAGGCGTTACTC-----GACAGAGGAGAGCAAGAAATGTA +GCCAGTAGATCCTAGA-CTATA-----------------------------GCCCTGG-- +----------------------------------- +>K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1 +------------------------------------------------------------ +------------------------------------------------------------ +------------CAGATACCT----------------------------------AAATG +ATCAACAGCTCCTGGG-GATT-TGGGGTTGCTCTGGAAAACTCATTTGCACCCCTGCT-- +----------------------------------- +>K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1 +---------------------------------------------GTCTGGGGCATCAAG +CAGCTCCAGGCAAGAATGCTGGCTGT---------------------------------- +--------GG-AAAGATACCT----------------------------------AAAGG +ATCAACAGCTCC------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1 +---------------------------------------------TCCTGACTC------ +CAATACTGTAGGAGATTCC----------------------------------------- +-----------ACCAATATTT----------------------------------GAGGG +CTTCCCACCCCCTGCG-TCCC-AGAAGTT------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1 +------------CGAGCAAGCTTCACAGGAGTTAAAAAATTGGATGACAGAAAC-CTTGT +TGGTCCAAAATGCGAACCCAGAT------------------------------------- +------------------------------------------------------------ +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_1717_2240_0_0_0_2_0_0_4b/1 +----------------------TCACAGGAGGTAAAAAATTGGATGACAGAAAC-CTTGT +TGGTCCAAAATGCGAACCCAGATTGT---------------------------------- +-----------AAGACTA------------------------------------------ +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1 +------------------------------------------------------------ +------------------------------------------------------------ +-----------------ATTT--------------------------TAAAAGCATTGGG +ACCAGCGGCTAC----------ACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAT +GAC-------------------------------- +>K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1 +--------------------------------------------TGACAGAAAC-CTAGT +TGGTCCAAAATGCGAACCCAGATTGT---------------------------------- +-----------AAGACAATTT--------------------------TAAAAGCATTGGG +ACCAGC------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1 +-----------------------------------------------------CACTTAT +TAAAAGAAAAGGGGGGACTGGA-------------------------------------- +-----------AGGGCTAATT--------------------------CACTCCCAAAGAA +GACAAGATATCCTTGA-TC----------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1 +-----------------------------------------------------------T +TAAAAGAAAAGGGGGGACTGGA-------------------------------------- +-----------AGGGCTAATT--------------------------CACTGCCAAAGAA +GACAAGATATCCTTGA-TCTGAGGA----------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1 +------------------------------------------------------------ +------------------------------------------------------------ +-------------GGCTAATT--------------------------CACTCCCAACGAA +GACAAGATATCCTTGA-TCTGTGGATGTACCACCCACAAGGCTACTTCCC---------- +----------------------------------- +>K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1 +------------------------------------------------------------ +--------ACAACGGAATTGG--------------------------------------- +-------------AGGAAATG--------------------------AACCAGTAGATAA +ATTAGTCAGTGCTGGA-ATCAGGAAAGTACTATTTTT----------------------- +----------------------------------- +>K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1 +------------------------------------------------------------ +----------AATAGTACTTT--------------------------------------- +-------------CCTGATTC--------------------------CAGCACTGACTAA +ATTATCTACTTGTTCA-TTTCCTCCAATTCCTTTGTGTG--------------------- +----------------------------------- +>K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1 +------------------------------------------------------------ +-----GAAGAAGCGGAGACAGC-------------------------------------- +---------G-ACGAAGAGCT-----------------------CATCAGAACAGTCAGA +CTCATCAAGCTTCTCA-ATCAAATCAG--------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1 +--------------------------------------------------------CTAT +GGCAGGAAGAAGCGGAGACAGC-------------------------------------- +---------G-ACGAAGAGCT-----------------------CATCAGAACAGTCAGA +CTCATCAAGCTTCTGT-A------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1 +------------------------------------------------------------ +-----------------ACAGC-------------------------------------- +---------G-ACGAAGAGCT-----------------------CATCAGAACAGACAGA +CTCATCAAGCTTCTCT-ATCAAAGCAGTAAGTATTACAT--------------------- +----------------------------------- +>K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1 +------------------------------------------------------------ +-----------AAGCTTGTGTA-------------------------------------- +-----------ATTGTTAATT-----TCTCT-------------GTCCCACTCCATCCAG +GTCGTGTGATTCCAAC-TCTGTTCCAG-------------------------AG------ +----------------------------------- +>K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1 +------------------------------------------------------------ +-----------AAAATTTCAAA-------------------------------------- +------------------------------------------------------AATTGG +GCCTGAAAATCCATAC-AATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTA------ +----------------------------------- +>K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1 +------------------------------------------------------------ +------------------------------------------------------------ +---------------AGCCAT--------------------------------------- +---------TGCTCTC-CAATTACTGTGATATTTCTCATGTTCATCTTGGGCCTTAACTA +TTCCATCTAAAAAT--------------------- +>K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1 +------------------------------------------------------------ +------------------------------------------------------------ +---------------TGATTT-GTTGTGTCAG------------------TTAGGGTGAC +AACTTTTTGTGTTCCT-CTATTAGTAACATATCCTGCTTTTCC----------------- +------------TA--------------------- +>K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1 +------------------------------------------------------------ +------------------------------------------------------------ +---------G-AGGGGGAGTT-GTTGTCTGTACCCCAGACCTGAAGCTCTCTTCTTGTGG +GGCTGTTGGCTCTGGT-CTGCT-------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1 +------------------------------------------------------------ +------------------------------------------------------------ +-----TTCTG-AGGGGGAGAT-GTTGTCTCTAGCCCAGACCTGAAGCTCTCTTCTGGTGG +GGCAGTTGGCTCTGGT-C------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1 +------------------------------------------------------------ +------------------------------------------------------------ +-------------------CT-CTAGTGTCCATTCATTGTGTGG------CTCCCTCTGT +GGCCCTTGGTCTTCTT-GGGCTTGTTCCATCTCTCCT----------------------- +----------------------------------- +>K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1 +------------------------------------------------------------ +---------ATAGAGCTTCCTTTAGTTGCCCCC-----------------------CTAT +CTTTATTGTG-ACGAGGGGAC-GTTGCCAAAGAGT--GACCTGAGG-------------- +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1 +------------------------------------------------------------ +------------------------------------------------------------ +----------------------GAAGTCTTGAGTTCTCTTATTAA-----GTTCTCTGAA +ATCTACTAATTTTCTC-CATTTAGTACTGTCTTTTTTC---------------------- +----------------------------------- +>K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1 +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------------------TTCTCTGAA +ATCTACTAATTTTCTC-CATTTAGTACTGTCTTTTTTCTT------TATGGCAAATACTG +GAGTAT------TG--------------------- +>K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------TGCCAAGGATCC------------------------ +GTTCACTAATCGAATG-GATCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT- +----------------------------------- +>K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1 +------------------------------------------------------------ +----------GGTGATATGGGCTGATGTACC-------------ATTTGCCCCTGGATGT +TCTGCACTAT-AGGGTAATTTTGGCTGACCTGAT-------------------------- +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1 +------------------------------------------------------------ +------CAGAAGTGATA----------------------------------CCCATGTTT +TCAGCATTAT-CAGAAGGAGCCACCCCACAAGATTT------------------------ +-AAACACCATGCTAAA-------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1 +------------------------------------------------------------ +------------------------------------------------------------ +------TTAT-CAGAAGGAGCCACCCCACAAGATTT------------------------ +-AAACACCATGCTACACCCAGTGGGGGGACATCAAGCAGCCA------------------ +----------------------------------- +>K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1 +------------------------------------------------------------ +--------------------------------------------------------GTTT +TCAGCATTAT-CAGAAGGAGCCACCCCACAAGATTT------------------------ +-AAACACCATGCTAAACACAGTGGGGGGACAT---------------------------- +----------------------------------- +>K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1 +------------------------------------------------------------ +----------TGTAACACC------------------------------TCAGTCATTAC +ACAGGCCTGT-CCAAAGGTATCCTTTGAGCCAATTC------------------------ +-CCATACATTATTGTG-------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1 +------------------------------------------------------------ +----------ATGTATG------------------------------------------- +--GGAATTGG-CTGAAAGGATACCTTTGGACAGGCC------------------------ +-TGAGTAATGACTGAG----GTGTTACAACTTGTC------------------------- +----------------------------------- +>K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1 +------------------------------------------------------------ +------------------------------------------------------------ +--------GA-CCAGCAAAGCACCTC---------T----GGAAAGGTGAAGGGGCAGTA +GTAATACAAGATAATA-GTGACATAAAAGTAGT--------------------------- +----------------------------------- +>K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1 +------------------------------------------------------------ +------------------------------------------------------------ +----------------------------------------GGAAAGGTGAAGGGGCAGTA +GTAATACAAGATAATA-GTGACATAACAGTAGTGCGAAGAAGAAAAGCAAA--------- +----------------------------------- +>K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1 +------------------------------------------------------------ +------------------------------------------------------------ +----------------GGGG--------------------GGAACAGTGCAGGGGAAAGA +ATAGTA-GACATAATA-GCAACAGACATACAAACTAAAGAATTACAAA------------ +----------------------------------- +>K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1 +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------------TTTTATGGTTCATAA +TCCACTCCATGTACTG-GTTCTTTTAGAATCTCTCATTTTTCTGCCCGTTCTAGCT---- +----------------------------------- +>K03455|HIVHXB2CG_3441_3888_1_0_0_0_0_0_5c/1 +------------------------------------------------------------ +------------------------------------------------------------ +----------------GAAGCAGAGCTAGAACTGGC----AGAAAACAGAGAGATTCTAA +AATAACCAGTACATGG-AGTGTATTATGACC----------------------------- +----------------------------------- +>K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1 +------------------------------------------------------------ +--------CAGAGGAGGTCT---------------------------------------- +-------------CTCGACGCAGGACTCGGCTTGCT----GAAGGGCGCACGG----CAA +GAGGCGAGGGGCGGCG-ACT---------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_667_1161_0_0_0_1_0_0_37/1 +------------------------------------------------------------ +--GGAAACCAGAGGAGCTCT---------------------------------------- +-------------CTCGACGCAGGACTCGGCTTGCT----GAAGCGCGCACGG----CAA +GAGGCGAGGGGCG----------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1 +------------------------------------------------------------ +-----------------------------------------------------------C +GGGCACACAC-TACTTGAAGCACTCA---------------------------------- +-AGGCAAGCTTTATTG-AGGCTTAAGCAGTGGGTTCCCTAGTTAGC-------------- +----------------------------------- +>K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1 +------------------------------------------------------------ +------------------------------------------------------------ +-------------CTTGAAGCACTCA---------------------------------- +-AGGCAAGCTTTATTG-CGGCTTAATCAGTGGGTTCCCTAGTTAGCCAGAGAGCT--CCC +A---------------------------------- +>K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1 +------------------------------------------------------------ +------------------------------------------------------------ +---------------TGCTGCTGGCT---------------------------------- +-CAGCTCGTCTCATTC-ATTCCCTTACAGTAGGCCATCCAATCACACTACATATTGACCA +C---------------------------------- +>K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1 +------------------------------------------------------------ +------------------------------------------------------GC---T +GCTCCCACCC-TATCTTGTGCTGGCT---------------------------------- +-CAGCTCGTCTCATTG-TTTCCCTTACAGTAGGCCATCCAATCA---------------- +----------------------------------- +>K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1 +------------------------------------------------------------ +------------------------------------------------------CTATGT +TTACTTCTAA-T-CCCGAATCCTGCA---------------------------------- +-AAGCTAGATAAATTG-CTTGTAACTCAGT----CTTCTGATTTGT-------------- +----------------------------------- +>K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1 +------------------------------------------------------------ +TCCTCTGTCGAGTAACGCCTATTCT----------------------------GCTATGA +CGACACCCAA-T-TCTGAAACTGGAT---------------------------------- +-AAAC---AGCAGTTG-TT----------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1 +------------------------------------------------------------ +------------------------------------------------------------ +------------------TAGGAACCAAAGA--------------------------AAG +ATAGTTAAGTGTTTCA-ATTGTGGCACAGAAGGGCACACAGCCAGAAATTGCAGG----- +----------------------------------- +>K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1 +-------------TAAGGTGTTTTAC-----------------------------TAAAC +TTTTCCATGTTGTAATCCTCATCCT----------------------------GTCTCCT +TGCCACACAA-T-CATCACCTG-------------------------------------- +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1 +------------------------------------------------------------ +------------------------------------------------------GCCACA +GAGGGAGCCA-CACAATGAATGGACA---------------------------------- +-CTATAGCTTTTAGAG-GAGCTTAAGAATGAAGCT-----GTTAGA-------------- +----------------------------------- +>K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1 +------------------------------------------------------------ +-------TAACGCCACCTTTGCCTA--------GTGTTACGAAACTGCCAGAGGA----- +-----------TAGATGGAACAAGCCC----------------------CAGAAG-ACGA +AGGG-------------------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1 +------------------------------------------------------------ +-------AGGGATTA-------------------TGGAAAACAGATGGCAGGTGATGATT +GTGTGGCAAT-TAGACAGGATGAGGAT----------------------TAGAAC-ATG- +---G-------------------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1 +------------------------------------------------------------ +------------CTACCTCTTCTTC---------TGCTAGACTGCCATTTAACAG----- +-----------CAGTTGAGTTGATACTACT---------------GGCCTAATTCCATG- +-TGT-------------------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1 +----------------------------------------------------------TT +AGGCCAGTAGTATCAACTCAACTGC---------TGTTAAATGGCAGTCTAGCAG----- +-----------AAGAAGAGGTAGTAAT----------------------TAGATC----- +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1 +------------------------------------------------------------ +----GTGGAGA---------------------------GAGAGACAGAGACAGAT---CC +ATTCGATTAG-TGAACGGATCC---------------------------TTGGCACTTAT +CTGGGACGATCT------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1 +------------------------------------------------------------ +----TCCGAAGATCG-------------------TCCCAGATAAGTGCCAAGGAT---CC +GTTCACTACT-CGAATGGATCTGA--C---------------------TCTGTCTCT--- +---------CTC------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1 +------------------------------------------------------------ +----CCAAGTA------------------------TCCCCATAAGTTTCATAGAT---AT +GATGCCCTAA-GCCATGGAGCCAAATC---------------------CTAGGAAAATGT +CTA--------------------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1 +------------------------------------------------------------ +---------TA------------------------TCCCCATAAGTTTCATCGAT---AT +GTTGCCCTAA-GCGATGGAGCCAAATC---------------------CTAGGAAAATGT +CTAAC----AGC------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1 +------------------------------------------------------------ +--------TGC------------------------TCTGAAGAAAATTCCCTG------- +GCCTTCCCTT-GTAGTAAGGCCATATC---------------------TTCCCTAAAAAA +TTAGC----CTGTCT--------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +-----CAGGATTAA--------CTGCGAATCTTTCTAGCTCCCTTGTTGCCCATACTATA +TGTTTTAATTTATATTTT------------TTCTT +>K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1 +------------------------------------------------------------ +-------------AATAGCAATT------------------------------------- +---------------------------------------------------------TGT +ACAAGCAGTTTTAGGC-TGACTTCGTGGATGCTTCCAGGGCTCTCGTC----------TA +GGATCAA---------------------------C +>K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1 +------------------------------------------------------------ +------------------------------------------------------------ +---------------------------------------------------------TGT +GTTCAGCTGTACTATT-ATGGTTATAGCATTTT-----CCGTGAAATTGACAGATCTAAT +TACTACCTCTTCT---------------------- +>K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1 +------------------------------------------------------------ +------------------------------------------------------------ +-----------------------------------------------------------T +TCTGGGAAGTTCAATT-AGGAATACCACATCCC-----GCAGGGTTAAAAAAGAAAAAAT +CAGTAACAGTACTGG-------------------- +>K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +------------TCCA-AGCCCTGTCTTATTCTTCTAGGTATGTGGCGCATAGCTCTACA +AGCTCCTTGTACTACTTCAATAA------------ +>K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1 +------------------------------------------------------------ +--------------ACC-CATCT------------------------------------- +---------------------------------------------------------TAT +AGCAAAATCCTTTCCA-AGCCCTGTCTTATTCTTCTAGGTATGTGGCGAATAGCTCTACA +----------------------------------- +>K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +-------------------------CTACTATTGCTACTAATGGTATAGGTTGCGTTACA +TGTACTACTTACTGCTTTGATAGAGAAGCTTGATG +>K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1 +------------------------------------------------------------ +-------------TCTA-CATAG------------------------------------- +---------------------------------------------------------TCT +CTAAAGGGTTCCTTTG-GTCCTTGTCTTATGTC------CAGAATGCTGGTAGGGCTATA +CATTC------------------------------ +>K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1 +------------------------------------------------------------ +------------------------------------------A-----ATTGTGGGTCAC +AGTC------------TATTATGGGGTACCTGTGTG----GCAGGAAG------------ +-----CAACCACCAC--------------TCTATTTTGTGC--------ATC-------- +----------------------------------- +>K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1 +------------------------------------------------------------ +------------------------------------------GGAGCTAGAACGATTCGC +AGTT------------AATCCTGGCGTGTTAGAAAC----ATCAGAAGGC-------TG- +-TAGACAAATACTG-----------------------------------GGA-------- +----------------------------------- +>K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1 +-------------------------T---------------------------------- +---TTGATTGACTAACTCTGATT-----CACTTTGATCTTGTAGTGCTTGAATGATTCCT +AATG------------CATATTG-TGAGTC------------------------------ +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1 +-------------------------C-----------------------------TTCTT +CTGTTAGTGGTATTACTTCTGTTAGTGCTTTGGTACCTCTAAGGAGTTTACATAATTGCC +TTAC-------------------------------------------------------- +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1 +------------------------------------------------------------ +-----------------------------------------AGGATTTTACATAATTGCC +TTAC------------TTAAATCCCTGGGT---------------AAATC-------TGA +CTTGCCCAATTCAAT--------------TTCCCCA-------------CTA-------- +----------------------------------- +>K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1 +------------------------------------------------------------ +--------------------------------------ACTTTATATTTATATAATTCAC +TTCT------------CCAATTGTCC---------------------------------- +----CTCATCTCTCC--------------TCCTCCAGGTCTGAAGATCTCGG-------- +----------------------------------- +>K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1 +-------------------------T-----------------------------CTTTG +CCTTGGTTGGAGCAACTCCTAATGGTTGAATTTTTACTACTTTATATTTATATAATTCCC +TTCT-------------------------------------------------------- +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1 +------------------------------------------------------------ +---TCGGAGTCATTGTTGCTATTACCACCATCTTTTGTTCATAGCAGCCCTGTAATATTT +GATT-------------------------------------------------------- +------------------------------------------AACATC-TAA-------- +----------------------------------- +>K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1 +------------------------------------------------------------ +-------------------------------------------------GATGGTTTTAT +AGACATCACT-ATGAAAGCCCTCATCCAAGAAAAAG----TTCAGAAGTA-------CA- +-CATCCCACTAGG----------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1 +------------------------------------------------------------ +-----------------------------------------------------AATTTAT +CAAGAGCCAT-TTAAAAATCTGAAAACAGGAAAATA----TGCAAGAATGAGGGGTGCC- +-CACACTAAT-------------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1 +------------------------------------------------------------ +--------CCCCATATTACTATGCTTTCTGTGGTTAATTTTTGCACTGCCTCTGTTAATT +GTTT-------------------------------------------------------- +------------------------------------------TACATC-ATTAGTGT--- +----------------------------------- +>K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1 +------------------------------------------------------------ +--------------------------------------------AGTTCATGTATCCAGT +GGATATATAG-AAGCAGAAGTTATTCCAGCAGAAAC---------------AGGGGCTG- +-AAACAGCATAT------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1 +-------------------ATTGTAC-----------------------------ACATT +TAGAATGAAAAGTTATCCTGGTA-------------------GCAGTTCATGTAGCCAGT +GGATATATAG-AAGCAGA------------------------------------------ +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1 +------------------------------------------------------------ +------------------------------------------------------------ +---TATAAAG-ACGCAGAAGTTATTCCAGCATACAC---------------AGGGCAGG- +-AAACAGCATATTTTC-TTTTCAAATTAG-----------------------------CA +G---------------------------------- +>K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1 +------------------------------------------------------------ +------------------------------------------------------------ +---TGCTAA---------------------------------------------TTTTA- +-AAAGACAATATTCTG-TTTCCTGCCCTGTTTCTGCTGGAATAACTTCTGCTTCTATATA +T---------------------------------- +>K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1 +------------------------------------------------------------ +---------GC-CTGCAT------------------------------------------ +---------G-GAATGGATGACCCGGAGAGAGA--------------------------- +------AGTGTTA-----------------GAGTGGAGGTTTGAGAGCCACCTAGCAATT +C------A--------------------------- +>K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1 +------------------------------------------------------------ +---------GTACTTTCT------------------------------------------ +---------A-TAGTGAATAGAGTTAGGCAGGT--------------------------- +------ATATTCA-----------------CCATTATCGTTTGAGACCCACCTCCCAACC +C---------------------------------- +>K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1 +------------------------------------------------------------ +-------CAAC-CTATACCAA--------------------------------------- +---TAG-TAG-CAATAGTAGCATTAGTAGTAGC--------------------------- +------AATAATA-----------------ATAGCAATAGTTGAGTGGTCCA-------- +----------------------------------- +>K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1 +----------------AGTAAGTAGT-----------------------------ACCTG +TAAC--GCAAC-CTATACCAA--------------------------------------- +---TAG-TAG-CAATAGTAGCATTAGTAGTAGC--------------------------- +------ACTAATA-----------------AT---------------------------- +----------------------------------- +>K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1 +------------------------------------------------------------ +---------CACCCATCC------------------------------------------ +---------A-AAGGAATTGAGGTTCTTTCTGA--------------------------- +------TGTTTTT-----------------TGTCTGGTGTGGTAAGTCCCCACCTCGACA +G---------------------------------- +>K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1 +ACAGTAATTGGAGAGCAATGGCTAGT-----------------------------GATTT +TAACCTGCCAC-CTGTAGTAG--------------------------------------- +---CAA-AAG-AAATAGTAGCCCG------------------------------------ +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1 +------------------------------------------------------------ +-------------TATGGTAC--------------------------------------- +---CAGTTAG-AGAAAGAACCCCTAGTAGGAGC--------------------------- +------AGAAACC-----------------TTCTATGTAGATGGGGCAGCTA-----ACA +G---------------------------------- +>K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1 +CT---------------------------------------------------------- +------------TTATATTTT--------------------------------------- +---TTCTT---------ACCCCCTGGCCTTAAC--------------------------- +------CGAATTT-----------------TTTCCCATCGATCTAATTCTCC-----CCC +GC--TTAA--------------------------- +>K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1 +------------------------------------------------------------ +---ACAGTAGAAAAATTCCCC--------------------------------------- +---TCCACCA-TTAAAACTGTGGTTACAATATC--------------------------- +-----TGGGTCCC-----------------CTCCTGAGGATTGGT--------------- +----------------------------------- +>K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1 +------------------------------------------------------------ +---ACAGTAGAAAAATTCCCC--------------------------------------- +---TCCACAA-TTAAAACTGTGGTTACAATTTC--------------------------- +-----TGGGTCCC-----------------CTCCTGAGGATTGCT--------------- +----------------------------------- +>K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1 +--------ATC----------CTCAT-----------------------------GCATC +TGTTCTACCATGTCATTTTTC--------------------------------------- +---CACATGT-TAAAATTTTCTGTCACATTTAC--------------------------- +------CAATACT----------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1 +--------TT-----------------------------------------------GGT +AAATGTGACAGAAAATTTTAA--------------------------------------- +---CATGTGG-AAAAATGACATGGTAGA---AC--------------------------- +------AGATGCA-------------------------------------TGAGGATATA +A---------------------------------- +>K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1 +---------------------------------------------------------GGT +AAATGTGACAGAAAATTTTAA--------------------------------------- +---CATGTGG-AAAAATGACATGGTAGA---AC--------------------------- +------AGATGCA-------------------------------------TGAGGATATA +AT-----C--------------------------- +>K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1 +------------------------------------------------------------ +------------------------------------------------------------ +---------T-TAAAATTTTCTGTCACATTTAC--------------------------- +------CAATACTA---------------CTTCTTGTGGGTTGGGGTCTGTGGGTACACA +GGCATGTG--------------------------- +>K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1 +TCCCTGTTCG-----------------------------------------------GGC +GCCACTGCTAGAGATTTTCCA--------------------------------------- +---CACTGAC-TAAAAGGGTCTGAGGGA---TCT-------------------------- +----CTAGTTACC----------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1 +----AAGTGCAAGCAATCTGATTCAC-----------------------------CCGAT +TTCTTCCAATTATGATGACAGGTGT----------------------------AGGTCCT +ACTAATACAG-T------------------------------------------------ +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1 +------------------------------------------------------------ +------------------------------------------------------------ +--ATAACCACAGAAAGCATAGTAATATGGGGAAAGA----CTCCTAAATTTAAACTGCC- +-CATACAAAAGGAAAC-------------------------------------------- +---------------------------AT------ +>K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1 +TTT--------------------------------------------------------- +------------------------------------------------------------ +-----------TTCAGTTCGCTTAGATGAAGACTTC----AGGCAGTATACTGCATTTAC +CATACCTAGTATAAAC-AATGAG------------------------------------- +-----------------------------------