Mercurial > repos > dave > pipelign

annotate test-data/pipelign-out1.fasta @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1
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2 ------------------------------------------------------------
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3 ------------------------------------------------------------
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4 -------------GATCCTGC----------------------------------ATATA
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5 AGCAGCAGCTTTTTGC-CTTTACTGGTTCTCTCTGGTTAGACCAGATCTGAGCCTGGG--
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6 -----------------------------------
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7 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1
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8 ------------------------------------------------------------
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9 ------------------------------------------------------------
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10 -------------AGCAGAATAGGCGTTACTC-----GACAGAGGAGAGCAAGAAATGTA
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11 GCCAGTAGATCCTAGA-CTATA-----------------------------GCCCTGG--
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12 -----------------------------------
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13 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1
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14 ------------------------------------------------------------
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15 ------------------------------------------------------------
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16 ------------CAGATACCT----------------------------------AAATG
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17 ATCAACAGCTCCTGGG-GATT-TGGGGTTGCTCTGGAAAACTCATTTGCACCCCTGCT--
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18 -----------------------------------
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19 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1
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20 ---------------------------------------------GTCTGGGGCATCAAG
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21 CAGCTCCAGGCAAGAATGCTGGCTGT----------------------------------
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22 --------GG-AAAGATACCT----------------------------------AAAGG
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23 ATCAACAGCTCC------------------------------------------------
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24 -----------------------------------
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25 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1
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26 ---------------------------------------------TCCTGACTC------
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27 CAATACTGTAGGAGATTCC-----------------------------------------
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28 -----------ACCAATATTT----------------------------------GAGGG
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29 CTTCCCACCCCCTGCG-TCCC-AGAAGTT-------------------------------
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30 -----------------------------------
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31 >K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1
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32 ------------CGAGCAAGCTTCACAGGAGTTAAAAAATTGGATGACAGAAAC-CTTGT
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33 TGGTCCAAAATGCGAACCCAGAT-------------------------------------
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34 ------------------------------------------------------------
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35 ------------------------------------------------------------
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36 -----------------------------------
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37 >K03455|HIVHXB2CG_1717_2240_0_0_0_2_0_0_4b/1
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38 ----------------------TCACAGGAGGTAAAAAATTGGATGACAGAAAC-CTTGT
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39 TGGTCCAAAATGCGAACCCAGATTGT----------------------------------
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40 -----------AAGACTA------------------------------------------
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41 ------------------------------------------------------------
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42 -----------------------------------
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43 >K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1
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44 ------------------------------------------------------------
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45 ------------------------------------------------------------
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46 -----------------ATTT--------------------------TAAAAGCATTGGG
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47 ACCAGCGGCTAC----------ACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAT
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48 GAC--------------------------------
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49 >K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1
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50 --------------------------------------------TGACAGAAAC-CTAGT
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51 TGGTCCAAAATGCGAACCCAGATTGT----------------------------------
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52 -----------AAGACAATTT--------------------------TAAAAGCATTGGG
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53 ACCAGC------------------------------------------------------
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54 -----------------------------------
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55 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1
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56 -----------------------------------------------------CACTTAT
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57 TAAAAGAAAAGGGGGGACTGGA--------------------------------------
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58 -----------AGGGCTAATT--------------------------CACTCCCAAAGAA
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59 GACAAGATATCCTTGA-TC-----------------------------------------
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60 -----------------------------------
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61 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1
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62 -----------------------------------------------------------T
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63 TAAAAGAAAAGGGGGGACTGGA--------------------------------------
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64 -----------AGGGCTAATT--------------------------CACTGCCAAAGAA
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65 GACAAGATATCCTTGA-TCTGAGGA-----------------------------------
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66 -----------------------------------
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67 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1
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68 ------------------------------------------------------------
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69 ------------------------------------------------------------
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70 -------------GGCTAATT--------------------------CACTCCCAACGAA
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71 GACAAGATATCCTTGA-TCTGTGGATGTACCACCCACAAGGCTACTTCCC----------
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72 -----------------------------------
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73 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1
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74 ------------------------------------------------------------
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75 --------ACAACGGAATTGG---------------------------------------
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76 -------------AGGAAATG--------------------------AACCAGTAGATAA
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77 ATTAGTCAGTGCTGGA-ATCAGGAAAGTACTATTTTT-----------------------
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78 -----------------------------------
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79 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1
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80 ------------------------------------------------------------
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81 ----------AATAGTACTTT---------------------------------------
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82 -------------CCTGATTC--------------------------CAGCACTGACTAA
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83 ATTATCTACTTGTTCA-TTTCCTCCAATTCCTTTGTGTG---------------------
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84 -----------------------------------
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85 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1
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86 ------------------------------------------------------------
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87 -----GAAGAAGCGGAGACAGC--------------------------------------
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88 ---------G-ACGAAGAGCT-----------------------CATCAGAACAGTCAGA
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89 CTCATCAAGCTTCTCA-ATCAAATCAG---------------------------------
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90 -----------------------------------
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91 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1
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92 --------------------------------------------------------CTAT
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93 GGCAGGAAGAAGCGGAGACAGC--------------------------------------
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94 ---------G-ACGAAGAGCT-----------------------CATCAGAACAGTCAGA
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95 CTCATCAAGCTTCTGT-A------------------------------------------
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96 -----------------------------------
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97 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1
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98 ------------------------------------------------------------
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99 -----------------ACAGC--------------------------------------
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100 ---------G-ACGAAGAGCT-----------------------CATCAGAACAGACAGA
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101 CTCATCAAGCTTCTCT-ATCAAAGCAGTAAGTATTACAT---------------------
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102 -----------------------------------
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103 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1
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104 ------------------------------------------------------------
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105 -----------AAGCTTGTGTA--------------------------------------
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106 -----------ATTGTTAATT-----TCTCT-------------GTCCCACTCCATCCAG
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107 GTCGTGTGATTCCAAC-TCTGTTCCAG-------------------------AG------
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108 -----------------------------------
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109 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1
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110 ------------------------------------------------------------
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111 -----------AAAATTTCAAA--------------------------------------
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112 ------------------------------------------------------AATTGG
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113 GCCTGAAAATCCATAC-AATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTA------
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114 -----------------------------------
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115 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1
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116 ------------------------------------------------------------
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117 ------------------------------------------------------------
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118 ---------------AGCCAT---------------------------------------
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119 ---------TGCTCTC-CAATTACTGTGATATTTCTCATGTTCATCTTGGGCCTTAACTA
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120 TTCCATCTAAAAAT---------------------
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121 >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1
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122 ------------------------------------------------------------
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123 ------------------------------------------------------------
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124 ---------------TGATTT-GTTGTGTCAG------------------TTAGGGTGAC
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125 AACTTTTTGTGTTCCT-CTATTAGTAACATATCCTGCTTTTCC-----------------
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126 ------------TA---------------------
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127 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1
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128 ------------------------------------------------------------
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129 ------------------------------------------------------------
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130 ---------G-AGGGGGAGTT-GTTGTCTGTACCCCAGACCTGAAGCTCTCTTCTTGTGG
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131 GGCTGTTGGCTCTGGT-CTGCT--------------------------------------
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132 -----------------------------------
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133 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1
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134 ------------------------------------------------------------
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135 ------------------------------------------------------------
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136 -----TTCTG-AGGGGGAGAT-GTTGTCTCTAGCCCAGACCTGAAGCTCTCTTCTGGTGG
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137 GGCAGTTGGCTCTGGT-C------------------------------------------
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138 -----------------------------------
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139 >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1
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140 ------------------------------------------------------------
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141 ------------------------------------------------------------
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142 -------------------CT-CTAGTGTCCATTCATTGTGTGG------CTCCCTCTGT
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143 GGCCCTTGGTCTTCTT-GGGCTTGTTCCATCTCTCCT-----------------------
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144 -----------------------------------
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145 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1
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146 ------------------------------------------------------------
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147 ---------ATAGAGCTTCCTTTAGTTGCCCCC-----------------------CTAT
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148 CTTTATTGTG-ACGAGGGGAC-GTTGCCAAAGAGT--GACCTGAGG--------------
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149 ------------------------------------------------------------
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150 -----------------------------------
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151 >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1
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152 ------------------------------------------------------------
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153 ------------------------------------------------------------
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154 ----------------------GAAGTCTTGAGTTCTCTTATTAA-----GTTCTCTGAA
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155 ATCTACTAATTTTCTC-CATTTAGTACTGTCTTTTTTC----------------------
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156 -----------------------------------
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157 >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1
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158 ------------------------------------------------------------
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159 ------------------------------------------------------------
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160 ---------------------------------------------------TTCTCTGAA
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161 ATCTACTAATTTTCTC-CATTTAGTACTGTCTTTTTTCTT------TATGGCAAATACTG
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162 GAGTAT------TG---------------------
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163 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1
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164 ------------------------------------------------------------
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165 ------------------------------------------------------------
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166 ------------------------TGCCAAGGATCC------------------------
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167 GTTCACTAATCGAATG-GATCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT-
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168 -----------------------------------
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169 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1
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170 ------------------------------------------------------------
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171 ----------GGTGATATGGGCTGATGTACC-------------ATTTGCCCCTGGATGT
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172 TCTGCACTAT-AGGGTAATTTTGGCTGACCTGAT--------------------------
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173 ------------------------------------------------------------
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174 -----------------------------------
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175 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1
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176 ------------------------------------------------------------
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177 ------CAGAAGTGATA----------------------------------CCCATGTTT
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178 TCAGCATTAT-CAGAAGGAGCCACCCCACAAGATTT------------------------
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179 -AAACACCATGCTAAA--------------------------------------------
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180 -----------------------------------
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181 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1
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182 ------------------------------------------------------------
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183 ------------------------------------------------------------
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184 ------TTAT-CAGAAGGAGCCACCCCACAAGATTT------------------------
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parents:
diff changeset
185 -AAACACCATGCTACACCCAGTGGGGGGACATCAAGCAGCCA------------------
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dave
parents:
diff changeset
186 -----------------------------------
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dave
parents:
diff changeset
187 >K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1
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parents:
diff changeset
188 ------------------------------------------------------------
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dave
parents:
diff changeset
189 --------------------------------------------------------GTTT
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dave
parents:
diff changeset
190 TCAGCATTAT-CAGAAGGAGCCACCCCACAAGATTT------------------------
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parents:
diff changeset
191 -AAACACCATGCTAAACACAGTGGGGGGACAT----------------------------
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dave
parents:
diff changeset
192 -----------------------------------
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parents:
diff changeset
193 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1
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parents:
diff changeset
194 ------------------------------------------------------------
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dave
parents:
diff changeset
195 ----------TGTAACACC------------------------------TCAGTCATTAC
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parents:
diff changeset
196 ACAGGCCTGT-CCAAAGGTATCCTTTGAGCCAATTC------------------------
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parents:
diff changeset
197 -CCATACATTATTGTG--------------------------------------------
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dave
parents:
diff changeset
198 -----------------------------------
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dave
parents:
diff changeset
199 >K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1
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parents:
diff changeset
200 ------------------------------------------------------------
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dave
parents:
diff changeset
201 ----------ATGTATG-------------------------------------------
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parents:
diff changeset
202 --GGAATTGG-CTGAAAGGATACCTTTGGACAGGCC------------------------
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parents:
diff changeset
203 -TGAGTAATGACTGAG----GTGTTACAACTTGTC-------------------------
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dave
parents:
diff changeset
204 -----------------------------------
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parents:
diff changeset
205 >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1
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parents:
diff changeset
206 ------------------------------------------------------------
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parents:
diff changeset
207 ------------------------------------------------------------
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parents:
diff changeset
208 --------GA-CCAGCAAAGCACCTC---------T----GGAAAGGTGAAGGGGCAGTA
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parents:
diff changeset
209 GTAATACAAGATAATA-GTGACATAAAAGTAGT---------------------------
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parents:
diff changeset
210 -----------------------------------
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parents:
diff changeset
211 >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1
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parents:
diff changeset
212 ------------------------------------------------------------
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parents:
diff changeset
213 ------------------------------------------------------------
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parents:
diff changeset
214 ----------------------------------------GGAAAGGTGAAGGGGCAGTA
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parents:
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215 GTAATACAAGATAATA-GTGACATAACAGTAGTGCGAAGAAGAAAAGCAAA---------
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parents:
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216 -----------------------------------
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parents:
diff changeset
217 >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1
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parents:
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218 ------------------------------------------------------------
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parents:
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219 ------------------------------------------------------------
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parents:
diff changeset
220 ----------------GGGG--------------------GGAACAGTGCAGGGGAAAGA
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parents:
diff changeset
221 ATAGTA-GACATAATA-GCAACAGACATACAAACTAAAGAATTACAAA------------
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parents:
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222 -----------------------------------
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parents:
diff changeset
223 >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1
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parents:
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224 ------------------------------------------------------------
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parents:
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225 ------------------------------------------------------------
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parents:
diff changeset
226 ---------------------------------------------TTTTATGGTTCATAA
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227 TCCACTCCATGTACTG-GTTCTTTTAGAATCTCTCATTTTTCTGCCCGTTCTAGCT----
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parents:
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228 -----------------------------------
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parents:
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229 >K03455|HIVHXB2CG_3441_3888_1_0_0_0_0_0_5c/1
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parents:
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230 ------------------------------------------------------------
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parents:
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231 ------------------------------------------------------------
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parents:
diff changeset
232 ----------------GAAGCAGAGCTAGAACTGGC----AGAAAACAGAGAGATTCTAA
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parents:
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233 AATAACCAGTACATGG-AGTGTATTATGACC-----------------------------
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parents:
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234 -----------------------------------
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parents:
diff changeset
235 >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1
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parents:
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236 ------------------------------------------------------------
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parents:
diff changeset
237 --------CAGAGGAGGTCT----------------------------------------
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parents:
diff changeset
238 -------------CTCGACGCAGGACTCGGCTTGCT----GAAGGGCGCACGG----CAA
9a3a2e04f47a Uploaded
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parents:
diff changeset
239 GAGGCGAGGGGCGGCG-ACT----------------------------------------
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parents:
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240 -----------------------------------
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parents:
diff changeset
241 >K03455|HIVHXB2CG_667_1161_0_0_0_1_0_0_37/1
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parents:
diff changeset
242 ------------------------------------------------------------
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parents:
diff changeset
243 --GGAAACCAGAGGAGCTCT----------------------------------------
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parents:
diff changeset
244 -------------CTCGACGCAGGACTCGGCTTGCT----GAAGCGCGCACGG----CAA
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parents:
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245 GAGGCGAGGGGCG-----------------------------------------------
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parents:
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246 -----------------------------------
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parents:
diff changeset
247 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1
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parents:
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248 ------------------------------------------------------------
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diff changeset
249 -----------------------------------------------------------C
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parents:
diff changeset
250 GGGCACACAC-TACTTGAAGCACTCA----------------------------------
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parents:
diff changeset
251 -AGGCAAGCTTTATTG-AGGCTTAAGCAGTGGGTTCCCTAGTTAGC--------------
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parents:
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252 -----------------------------------
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parents:
diff changeset
253 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1
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parents:
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254 ------------------------------------------------------------
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parents:
diff changeset
255 ------------------------------------------------------------
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parents:
diff changeset
256 -------------CTTGAAGCACTCA----------------------------------
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parents:
diff changeset
257 -AGGCAAGCTTTATTG-CGGCTTAATCAGTGGGTTCCCTAGTTAGCCAGAGAGCT--CCC
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parents:
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258 A----------------------------------
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parents:
diff changeset
259 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1
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parents:
diff changeset
260 ------------------------------------------------------------
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parents:
diff changeset
261 ------------------------------------------------------------
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parents:
diff changeset
262 ---------------TGCTGCTGGCT----------------------------------
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parents:
diff changeset
263 -CAGCTCGTCTCATTC-ATTCCCTTACAGTAGGCCATCCAATCACACTACATATTGACCA
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parents:
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264 C----------------------------------
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parents:
diff changeset
265 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1
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parents:
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266 ------------------------------------------------------------
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parents:
diff changeset
267 ------------------------------------------------------GC---T
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parents:
diff changeset
268 GCTCCCACCC-TATCTTGTGCTGGCT----------------------------------
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parents:
diff changeset
269 -CAGCTCGTCTCATTG-TTTCCCTTACAGTAGGCCATCCAATCA----------------
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parents:
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270 -----------------------------------
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parents:
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271 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1
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parents:
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272 ------------------------------------------------------------
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parents:
diff changeset
273 ------------------------------------------------------CTATGT
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parents:
diff changeset
274 TTACTTCTAA-T-CCCGAATCCTGCA----------------------------------
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parents:
diff changeset
275 -AAGCTAGATAAATTG-CTTGTAACTCAGT----CTTCTGATTTGT--------------
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parents:
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276 -----------------------------------
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parents:
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277 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1
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parents:
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278 ------------------------------------------------------------
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parents:
diff changeset
279 TCCTCTGTCGAGTAACGCCTATTCT----------------------------GCTATGA
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parents:
diff changeset
280 CGACACCCAA-T-TCTGAAACTGGAT----------------------------------
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parents:
diff changeset
281 -AAAC---AGCAGTTG-TT-----------------------------------------
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parents:
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282 -----------------------------------
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parents:
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283 >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1
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parents:
diff changeset
284 ------------------------------------------------------------
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parents:
diff changeset
285 ------------------------------------------------------------
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dave
parents:
diff changeset
286 ------------------TAGGAACCAAAGA--------------------------AAG
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parents:
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287 ATAGTTAAGTGTTTCA-ATTGTGGCACAGAAGGGCACACAGCCAGAAATTGCAGG-----
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parents:
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288 -----------------------------------
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parents:
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289 >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1
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parents:
diff changeset
290 -------------TAAGGTGTTTTAC-----------------------------TAAAC
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parents:
diff changeset
291 TTTTCCATGTTGTAATCCTCATCCT----------------------------GTCTCCT
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parents:
diff changeset
292 TGCCACACAA-T-CATCACCTG--------------------------------------
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parents:
diff changeset
293 ------------------------------------------------------------
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dave
parents:
diff changeset
294 -----------------------------------
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parents:
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295 >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1
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parents:
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296 ------------------------------------------------------------
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parents:
diff changeset
297 ------------------------------------------------------GCCACA
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parents:
diff changeset
298 GAGGGAGCCA-CACAATGAATGGACA----------------------------------
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parents:
diff changeset
299 -CTATAGCTTTTAGAG-GAGCTTAAGAATGAAGCT-----GTTAGA--------------
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parents:
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300 -----------------------------------
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parents:
diff changeset
301 >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1
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parents:
diff changeset
302 ------------------------------------------------------------
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parents:
diff changeset
303 -------TAACGCCACCTTTGCCTA--------GTGTTACGAAACTGCCAGAGGA-----
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parents:
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304 -----------TAGATGGAACAAGCCC----------------------CAGAAG-ACGA
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parents:
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305 AGGG--------------------------------------------------------
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parents:
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306 -----------------------------------
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parents:
diff changeset
307 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1
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parents:
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308 ------------------------------------------------------------
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parents:
diff changeset
309 -------AGGGATTA-------------------TGGAAAACAGATGGCAGGTGATGATT
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parents:
diff changeset
310 GTGTGGCAAT-TAGACAGGATGAGGAT----------------------TAGAAC-ATG-
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parents:
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311 ---G--------------------------------------------------------
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parents:
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312 -----------------------------------
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parents:
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313 >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1
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parents:
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314 ------------------------------------------------------------
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parents:
diff changeset
315 ------------CTACCTCTTCTTC---------TGCTAGACTGCCATTTAACAG-----
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parents:
diff changeset
316 -----------CAGTTGAGTTGATACTACT---------------GGCCTAATTCCATG-
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317 -TGT--------------------------------------------------------
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parents:
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318 -----------------------------------
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parents:
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319 >K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1
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parents:
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320 ----------------------------------------------------------TT
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parents:
diff changeset
321 AGGCCAGTAGTATCAACTCAACTGC---------TGTTAAATGGCAGTCTAGCAG-----
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parents:
diff changeset
322 -----------AAGAAGAGGTAGTAAT----------------------TAGATC-----
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parents:
diff changeset
323 ------------------------------------------------------------
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parents:
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324 -----------------------------------
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parents:
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325 >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1
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parents:
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326 ------------------------------------------------------------
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parents:
diff changeset
327 ----GTGGAGA---------------------------GAGAGACAGAGACAGAT---CC
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parents:
diff changeset
328 ATTCGATTAG-TGAACGGATCC---------------------------TTGGCACTTAT
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parents:
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329 CTGGGACGATCT------------------------------------------------
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parents:
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330 -----------------------------------
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parents:
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331 >K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1
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parents:
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332 ------------------------------------------------------------
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parents:
diff changeset
333 ----TCCGAAGATCG-------------------TCCCAGATAAGTGCCAAGGAT---CC
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parents:
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334 GTTCACTACT-CGAATGGATCTGA--C---------------------TCTGTCTCT---
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parents:
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335 ---------CTC------------------------------------------------
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parents:
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336 -----------------------------------
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parents:
diff changeset
337 >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1
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parents:
diff changeset
338 ------------------------------------------------------------
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parents:
diff changeset
339 ----CCAAGTA------------------------TCCCCATAAGTTTCATAGAT---AT
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parents:
diff changeset
340 GATGCCCTAA-GCCATGGAGCCAAATC---------------------CTAGGAAAATGT
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parents:
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341 CTA---------------------------------------------------------
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parents:
diff changeset
342 -----------------------------------
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parents:
diff changeset
343 >K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1
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parents:
diff changeset
344 ------------------------------------------------------------
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parents:
diff changeset
345 ---------TA------------------------TCCCCATAAGTTTCATCGAT---AT
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parents:
diff changeset
346 GTTGCCCTAA-GCGATGGAGCCAAATC---------------------CTAGGAAAATGT
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parents:
diff changeset
347 CTAAC----AGC------------------------------------------------
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parents:
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348 -----------------------------------
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parents:
diff changeset
349 >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1
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parents:
diff changeset
350 ------------------------------------------------------------
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parents:
diff changeset
351 --------TGC------------------------TCTGAAGAAAATTCCCTG-------
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parents:
diff changeset
352 GCCTTCCCTT-GTAGTAAGGCCATATC---------------------TTCCCTAAAAAA
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parents:
diff changeset
353 TTAGC----CTGTCT---------------------------------------------
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parents:
diff changeset
354 -----------------------------------
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parents:
diff changeset
355 >K03455|HIVHXB2CG_368_934_2_0_0_3_0_0_f/1
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parents:
diff changeset
356 ------------------------------------------------------------
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parents:
diff changeset
357 ------------------------------------------------------------
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parents:
diff changeset
358 ------------------------------------------------------------
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parents:
diff changeset
359 -----CAGGATTAA--------CTGCGAATCTTTCTAGCTCCCTTGTTGCCCATACTATA
9a3a2e04f47a Uploaded
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parents:
diff changeset
360 TGTTTTAATTTATATTTT------------TTCTT
9a3a2e04f47a Uploaded
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parents:
diff changeset
361 >K03455|HIVHXB2CG_5438_5909_1_0_0_4_0_0_7/1
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parents:
diff changeset
362 ------------------------------------------------------------
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parents:
diff changeset
363 -------------AATAGCAATT-------------------------------------
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parents:
diff changeset
364 ---------------------------------------------------------TGT
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parents:
diff changeset
365 ACAAGCAGTTTTAGGC-TGACTTCGTGGATGCTTCCAGGGCTCTCGTC----------TA
9a3a2e04f47a Uploaded
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parents:
diff changeset
366 GGATCAA---------------------------C
9a3a2e04f47a Uploaded
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parents:
diff changeset
367 >K03455|HIVHXB2CG_6619_7094_0_0_0_2_0_0_41/1
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parents:
diff changeset
368 ------------------------------------------------------------
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parents:
diff changeset
369 ------------------------------------------------------------
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parents:
diff changeset
370 ---------------------------------------------------------TGT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
371 GTTCAGCTGTACTATT-ATGGTTATAGCATTTT-----CCGTGAAATTGACAGATCTAAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
372 TACTACCTCTTCT----------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
373 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
374 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
375 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
376 -----------------------------------------------------------T
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
377 TCTGGGAAGTTCAATT-AGGAATACCACATCCC-----GCAGGGTTAAAAAAGAAAAAAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
378 CAGTAACAGTACTGG--------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
379 >K03455|HIVHXB2CG_8342_8779_1_0_0_2_0_0_40/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
380 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
381 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
382 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
383 ------------TCCA-AGCCCTGTCTTATTCTTCTAGGTATGTGGCGCATAGCTCTACA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
384 AGCTCCTTGTACTACTTCAATAA------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
385 >K03455|HIVHXB2CG_8349_8802_1_0_0_0_0_0_29/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
386 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
387 --------------ACC-CATCT-------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
388 ---------------------------------------------------------TAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
389 AGCAAAATCCTTTCCA-AGCCCTGTCTTATTCTTCTAGGTATGTGGCGAATAGCTCTACA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
390 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
391 >K03455|HIVHXB2CG_5574_6092_2_0_0_1_0_0_5/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
392 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
393 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
394 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
395 -------------------------CTACTATTGCTACTAATGGTATAGGTTGCGTTACA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
396 TGTACTACTTACTGCTTTGATAGAGAAGCTTGATG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
397 >K03455|HIVHXB2CG_1235_1682_3_0_0_0_0_0_56/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
398 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
399 -------------TCTA-CATAG-------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
400 ---------------------------------------------------------TCT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
401 CTAAAGGGTTCCTTTG-GTCCTTGTCTTATGTC------CAGAATGCTGGTAGGGCTATA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
402 CATTC------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
403 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
404 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
405 ------------------------------------------A-----ATTGTGGGTCAC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
406 AGTC------------TATTATGGGGTACCTGTGTG----GCAGGAAG------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
407 -----CAACCACCAC--------------TCTATTTTGTGC--------ATC--------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
408 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
409 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
410 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
411 ------------------------------------------GGAGCTAGAACGATTCGC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
412 AGTT------------AATCCTGGCGTGTTAGAAAC----ATCAGAAGGC-------TG-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
413 -TAGACAAATACTG-----------------------------------GGA--------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
414 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
415 >K03455|HIVHXB2CG_3596_4110_1_0_0_2_0_0_59/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
416 -------------------------T----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
417 ---TTGATTGACTAACTCTGATT-----CACTTTGATCTTGTAGTGCTTGAATGATTCCT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
418 AATG------------CATATTG-TGAGTC------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
419 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
420 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
421 >K03455|HIVHXB2CG_2928_3444_5_0_0_1_0_0_5d/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
422 -------------------------C-----------------------------TTCTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
423 CTGTTAGTGGTATTACTTCTGTTAGTGCTTTGGTACCTCTAAGGAGTTTACATAATTGCC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
424 TTAC--------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
425 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
426 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
427 >K03455|HIVHXB2CG_2832_3397_3_0_0_2_0_0_9/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
428 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
429 -----------------------------------------AGGATTTTACATAATTGCC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
430 TTAC------------TTAAATCCCTGGGT---------------AAATC-------TGA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
431 CTTGCCCAATTCAAT--------------TTCCCCA-------------CTA--------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
432 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
433 >K03455|HIVHXB2CG_7233_7687_1_0_0_1_0_0_5a/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
434 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
435 --------------------------------------ACTTTATATTTATATAATTCAC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
436 TTCT------------CCAATTGTCC----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
437 ----CTCATCTCTCC--------------TCCTCCAGGTCTGAAGATCTCGG--------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
438 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
439 >K03455|HIVHXB2CG_7273_7731_1_0_0_5_0_0_6/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
440 -------------------------T-----------------------------CTTTG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
441 CCTTGGTTGGAGCAACTCCTAATGGTTGAATTTTTACTACTTTATATTTATATAATTCCC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
442 TTCT--------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
443 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
444 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
445 >K03455|HIVHXB2CG_7126_7621_1_1_1_3_1_0_26/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
446 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
447 ---TCGGAGTCATTGTTGCTATTACCACCATCTTTTGTTCATAGCAGCCCTGTAATATTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
448 GATT--------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
449 ------------------------------------------AACATC-TAA--------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
450 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
451 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
452 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
453 -------------------------------------------------GATGGTTTTAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
454 AGACATCACT-ATGAAAGCCCTCATCCAAGAAAAAG----TTCAGAAGTA-------CA-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
455 -CATCCCACTAGG-----------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
456 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
457 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
458 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
459 -----------------------------------------------------AATTTAT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
460 CAAGAGCCAT-TTAAAAATCTGAAAACAGGAAAATA----TGCAAGAATGAGGGGTGCC-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
461 -CACACTAAT--------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
462 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
463 >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
464 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
465 --------CCCCATATTACTATGCTTTCTGTGGTTAATTTTTGCACTGCCTCTGTTAATT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
466 GTTT--------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
467 ------------------------------------------TACATC-ATTAGTGT---
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
468 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
469 >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
470 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
471 --------------------------------------------AGTTCATGTATCCAGT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
472 GGATATATAG-AAGCAGAAGTTATTCCAGCAGAAAC---------------AGGGGCTG-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
473 -AAACAGCATAT------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
474 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
475 >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
476 -------------------ATTGTAC-----------------------------ACATT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
477 TAGAATGAAAAGTTATCCTGGTA-------------------GCAGTTCATGTAGCCAGT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
478 GGATATATAG-AAGCAGA------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
479 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
480 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
481 >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
482 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
483 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
484 ---TATAAAG-ACGCAGAAGTTATTCCAGCATACAC---------------AGGGCAGG-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
485 -AAACAGCATATTTTC-TTTTCAAATTAG-----------------------------CA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
486 G----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
487 >K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
488 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
489 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
490 ---TGCTAA---------------------------------------------TTTTA-
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
491 -AAAGACAATATTCTG-TTTCCTGCCCTGTTTCTGCTGGAATAACTTCTGCTTCTATATA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
492 T----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
493 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
494 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
495 ---------GC-CTGCAT------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
496 ---------G-GAATGGATGACCCGGAGAGAGA---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
497 ------AGTGTTA-----------------GAGTGGAGGTTTGAGAGCCACCTAGCAATT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
498 C------A---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
499 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
500 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
501 ---------GTACTTTCT------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
502 ---------A-TAGTGAATAGAGTTAGGCAGGT---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
503 ------ATATTCA-----------------CCATTATCGTTTGAGACCCACCTCCCAACC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
504 C----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
505 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
506 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
507 -------CAAC-CTATACCAA---------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
508 ---TAG-TAG-CAATAGTAGCATTAGTAGTAGC---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
509 ------AATAATA-----------------ATAGCAATAGTTGAGTGGTCCA--------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
510 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
511 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
512 ----------------AGTAAGTAGT-----------------------------ACCTG
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
513 TAAC--GCAAC-CTATACCAA---------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
514 ---TAG-TAG-CAATAGTAGCATTAGTAGTAGC---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
515 ------ACTAATA-----------------AT----------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
516 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
517 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
518 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
519 ---------CACCCATCC------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
520 ---------A-AAGGAATTGAGGTTCTTTCTGA---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
521 ------TGTTTTT-----------------TGTCTGGTGTGGTAAGTCCCCACCTCGACA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
522 G----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
523 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
524 ACAGTAATTGGAGAGCAATGGCTAGT-----------------------------GATTT
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
525 TAACCTGCCAC-CTGTAGTAG---------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
526 ---CAA-AAG-AAATAGTAGCCCG------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
527 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
528 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
529 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
530 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
531 -------------TATGGTAC---------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
532 ---CAGTTAG-AGAAAGAACCCCTAGTAGGAGC---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
533 ------AGAAACC-----------------TTCTATGTAGATGGGGCAGCTA-----ACA
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
534 G----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
535 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
536 CT----------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
537 ------------TTATATTTT---------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
538 ---TTCTT---------ACCCCCTGGCCTTAAC---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
539 ------CGAATTT-----------------TTTCCCATCGATCTAATTCTCC-----CCC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
540 GC--TTAA---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
541 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
542 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
543 ---ACAGTAGAAAAATTCCCC---------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
544 ---TCCACCA-TTAAAACTGTGGTTACAATATC---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
545 -----TGGGTCCC-----------------CTCCTGAGGATTGGT---------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
546 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
547 >K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
548 ------------------------------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
549 ---ACAGTAGAAAAATTCCCC---------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
550 ---TCCACAA-TTAAAACTGTGGTTACAATTTC---------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
551 -----TGGGTCCC-----------------CTCCTGAGGATTGCT---------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
552 -----------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
553 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
554 --------ATC----------CTCAT-----------------------------GCATC
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
555 TGTTCTACCATGTCATTTTTC---------------------------------------
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
556 ---CACATGT-TAAAATTTTCTGTCACATTTAC---------------------------
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parents:
diff changeset
557 ------CAATACT-----------------------------------------------
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parents:
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558 -----------------------------------
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parents:
diff changeset
559 >K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1
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dave
parents:
diff changeset
560 --------TT-----------------------------------------------GGT
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parents:
diff changeset
561 AAATGTGACAGAAAATTTTAA---------------------------------------
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parents:
diff changeset
562 ---CATGTGG-AAAAATGACATGGTAGA---AC---------------------------
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parents:
diff changeset
563 ------AGATGCA-------------------------------------TGAGGATATA
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parents:
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564 A----------------------------------
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dave
parents:
diff changeset
565 >K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1
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dave
parents:
diff changeset
566 ---------------------------------------------------------GGT
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dave
parents:
diff changeset
567 AAATGTGACAGAAAATTTTAA---------------------------------------
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dave
parents:
diff changeset
568 ---CATGTGG-AAAAATGACATGGTAGA---AC---------------------------
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parents:
diff changeset
569 ------AGATGCA-------------------------------------TGAGGATATA
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parents:
diff changeset
570 AT-----C---------------------------
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parents:
diff changeset
571 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1
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dave
parents:
diff changeset
572 ------------------------------------------------------------
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parents:
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573 ------------------------------------------------------------
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parents:
diff changeset
574 ---------T-TAAAATTTTCTGTCACATTTAC---------------------------
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parents:
diff changeset
575 ------CAATACTA---------------CTTCTTGTGGGTTGGGGTCTGTGGGTACACA
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parents:
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576 GGCATGTG---------------------------
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parents:
diff changeset
577 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1
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parents:
diff changeset
578 TCCCTGTTCG-----------------------------------------------GGC
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parents:
diff changeset
579 GCCACTGCTAGAGATTTTCCA---------------------------------------
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parents:
diff changeset
580 ---CACTGAC-TAAAAGGGTCTGAGGGA---TCT--------------------------
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parents:
diff changeset
581 ----CTAGTTACC-----------------------------------------------
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parents:
diff changeset
582 -----------------------------------
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dave
parents:
diff changeset
583 >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1
9a3a2e04f47a Uploaded
dave
parents:
diff changeset
584 ----AAGTGCAAGCAATCTGATTCAC-----------------------------CCGAT
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dave
parents:
diff changeset
585 TTCTTCCAATTATGATGACAGGTGT----------------------------AGGTCCT
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parents:
diff changeset
586 ACTAATACAG-T------------------------------------------------
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parents:
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587 ------------------------------------------------------------
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parents:
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588 -----------------------------------
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dave
parents:
diff changeset
589 >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1
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parents:
diff changeset
590 ------------------------------------------------------------
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parents:
diff changeset
591 ------------------------------------------------------------
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parents:
diff changeset
592 --ATAACCACAGAAAGCATAGTAATATGGGGAAAGA----CTCCTAAATTTAAACTGCC-
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parents:
diff changeset
593 -CATACAAAAGGAAAC--------------------------------------------
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parents:
diff changeset
594 ---------------------------AT------
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parents:
diff changeset
595 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1
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dave
parents:
diff changeset
596 TTT---------------------------------------------------------
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parents:
diff changeset
597 ------------------------------------------------------------
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parents:
diff changeset
598 -----------TTCAGTTCGCTTAGATGAAGACTTC----AGGCAGTATACTGCATTTAC
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dave
parents:
diff changeset
599 CATACCTAGTATAAAC-AATGAG-------------------------------------
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parents:
diff changeset
600 -----------------------------------