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| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
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HMMER3/f [3.2.1 | June 2018] NAME long.40.aln LENG 85 MAXL 180 ALPH DNA RF no MM no CONS yes CS no MAP yes DATE Tue May 28 13:12:03 2019 NSEQ 2 EFFN 2.000000 CKSUM 850921081 STATS LOCAL MSV -9.2442 0.73770 STATS LOCAL VITERBI -10.9061 0.73770 STATS LOCAL FORWARD -3.0276 0.73770 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34684 1.48715 1.41637 1.30441 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 1.09289 1.89038 1.88803 1.01509 1 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 1.84050 1.95342 1.03654 1.06480 2 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 1.84050 1.95342 1.03654 1.06480 3 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 1.09289 1.89038 1.88803 1.01509 4 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.28818 2.60848 2.42319 2.42940 5 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.01896 1.01168 2.12953 0.95527 6 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 1.12273 2.17004 0.88086 1.92408 7 g - - - 1.38629 1.38629 1.38629 1.38629 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547 8 1.98342 0.60779 2.04641 1.66785 8 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 9 1.98342 0.60779 2.04641 1.66785 9 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 10 1.91091 1.78233 1.95844 0.61114 10 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 11 1.98342 0.60779 2.04641 1.66785 11 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 12 0.56139 2.08489 1.86185 1.89791 12 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 13 1.97267 2.25870 0.46443 2.05625 13 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 14 1.91091 1.78233 1.95844 0.61114 14 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 15 1.98342 0.60779 2.04641 1.66785 15 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 16 0.56139 2.08489 1.86185 1.89791 16 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 17 1.91091 1.78233 1.95844 0.61114 17 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 18 1.91091 1.78233 1.95844 0.61114 18 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 19 0.56139 2.08489 1.86185 1.89791 19 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 20 1.98342 0.60779 2.04641 1.66785 20 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 21 0.56139 2.08489 1.86185 1.89791 21 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 22 1.98342 0.60779 2.04641 1.66785 22 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 0.51083 0.91629 23 1.12273 2.17004 0.88086 1.92408 23 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.38910 2.82844 0.25233 2.62837 24 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 1.12273 2.17004 0.88086 1.92408 25 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 1.08498 1.08670 1.94700 1.70340 26 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.01896 1.01168 2.12953 0.95527 27 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.31486 2.12647 2.41211 0.36768 28 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.38910 2.82844 0.25233 2.62837 29 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 1.84050 1.95342 1.03654 1.06480 30 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.46232 0.33808 2.58153 2.07174 31 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.01896 1.01168 2.12953 0.95527 32 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 1.12273 2.17004 0.88086 1.92408 33 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.28818 2.60848 2.42319 2.42940 34 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.28818 2.60848 2.42319 2.42940 35 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 1.12273 2.17004 0.88086 1.92408 36 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.38910 2.82844 0.25233 2.62837 37 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 1.84050 1.95342 1.03654 1.06480 38 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.28818 2.60848 2.42319 2.42940 39 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.31486 2.12647 2.41211 0.36768 40 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 1.08498 1.08670 1.94700 1.70340 41 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.46232 0.33808 2.58153 2.07174 42 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.01896 1.01168 2.12953 0.95527 43 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.31486 2.12647 2.41211 0.36768 44 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.31486 2.12647 2.41211 0.36768 45 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 1.84050 1.95342 1.03654 1.06480 46 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 1.12273 2.17004 0.88086 1.92408 47 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.38910 2.82844 0.25233 2.62837 48 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 1.08498 1.08670 1.94700 1.70340 49 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.46232 0.33808 2.58153 2.07174 50 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 0.28818 2.60848 2.42319 2.42940 51 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 1.12273 2.17004 0.88086 1.92408 52 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 1.84050 1.95342 1.03654 1.06480 53 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.01896 1.01168 2.12953 0.95527 54 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.46232 0.33808 2.58153 2.07174 55 c - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.01896 1.01168 2.12953 0.95527 56 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 1.88401 1.14290 1.03416 1.75097 57 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.28818 2.60848 2.42319 2.42940 58 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 1.84050 1.95342 1.03654 1.06480 59 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 1.09289 1.89038 1.88803 1.01509 60 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 1.08498 1.08670 1.94700 1.70340 61 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 62 0.28818 2.60848 2.42319 2.42940 62 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 63 2.31486 2.12647 2.41211 0.36768 63 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 64 1.84050 1.95342 1.03654 1.06480 64 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 65 0.28818 2.60848 2.42319 2.42940 65 a - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 66 2.01896 1.01168 2.12953 0.95527 66 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 67 2.31486 2.12647 2.41211 0.36768 67 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 68 2.38910 2.82844 0.25233 2.62837 68 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 69 1.09289 1.89038 1.88803 1.01509 69 t - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 70 2.38910 2.82844 0.25233 2.62837 70 g - - - 1.38629 1.38629 1.38629 1.38629 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547 71 1.97267 2.25870 0.46443 2.05625 71 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 72 1.91091 1.78233 1.95844 0.61114 72 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 73 1.97267 2.25870 0.46443 2.05625 73 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 74 1.91091 1.78233 1.95844 0.61114 74 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 75 1.91091 1.78233 1.95844 0.61114 75 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 76 0.56139 2.08489 1.86185 1.89791 76 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 77 1.98342 0.60779 2.04641 1.66785 77 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 78 0.56139 2.08489 1.86185 1.89791 78 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 79 0.56139 2.08489 1.86185 1.89791 79 a - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 80 1.98342 0.60779 2.04641 1.66785 80 c - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 81 1.91091 1.78233 1.95844 0.61114 81 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 82 1.91091 1.78233 1.95844 0.61114 82 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 83 1.97267 2.25870 0.46443 2.05625 83 g - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 84 1.91091 1.78233 1.95844 0.61114 84 t - - - 1.38629 1.38629 1.38629 1.38629 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314 85 1.98342 0.60779 2.04641 1.66785 85 c - - - 1.38629 1.38629 1.38629 1.38629 0.03279 3.43399 * 1.46634 0.26236 0.00000 * //