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comparison test-data/files/long.40.hmm @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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-1:000000000000 0:9a3a2e04f47a
1 HMMER3/f [3.2.1 | June 2018]
2 NAME long.40.aln
3 LENG 85
4 MAXL 180
5 ALPH DNA
6 RF no
7 MM no
8 CONS yes
9 CS no
10 MAP yes
11 DATE Tue May 28 13:12:03 2019
12 NSEQ 2
13 EFFN 2.000000
14 CKSUM 850921081
15 STATS LOCAL MSV -9.2442 0.73770
16 STATS LOCAL VITERBI -10.9061 0.73770
17 STATS LOCAL FORWARD -3.0276 0.73770
18 HMM A C G T
19 m->m m->i m->d i->m i->i d->m d->d
20 COMPO 1.34684 1.48715 1.41637 1.30441
21 1.38629 1.38629 1.38629 1.38629
22 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
23 1 1.09289 1.89038 1.88803 1.01509 1 t - - -
24 1.38629 1.38629 1.38629 1.38629
25 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
26 2 1.84050 1.95342 1.03654 1.06480 2 g - - -
27 1.38629 1.38629 1.38629 1.38629
28 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
29 3 1.84050 1.95342 1.03654 1.06480 3 g - - -
30 1.38629 1.38629 1.38629 1.38629
31 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
32 4 1.09289 1.89038 1.88803 1.01509 4 t - - -
33 1.38629 1.38629 1.38629 1.38629
34 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
35 5 0.28818 2.60848 2.42319 2.42940 5 a - - -
36 1.38629 1.38629 1.38629 1.38629
37 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
38 6 2.01896 1.01168 2.12953 0.95527 6 t - - -
39 1.38629 1.38629 1.38629 1.38629
40 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
41 7 1.12273 2.17004 0.88086 1.92408 7 g - - -
42 1.38629 1.38629 1.38629 1.38629
43 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547
44 8 1.98342 0.60779 2.04641 1.66785 8 c - - -
45 1.38629 1.38629 1.38629 1.38629
46 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
47 9 1.98342 0.60779 2.04641 1.66785 9 c - - -
48 1.38629 1.38629 1.38629 1.38629
49 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
50 10 1.91091 1.78233 1.95844 0.61114 10 t - - -
51 1.38629 1.38629 1.38629 1.38629
52 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
53 11 1.98342 0.60779 2.04641 1.66785 11 c - - -
54 1.38629 1.38629 1.38629 1.38629
55 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
56 12 0.56139 2.08489 1.86185 1.89791 12 a - - -
57 1.38629 1.38629 1.38629 1.38629
58 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
59 13 1.97267 2.25870 0.46443 2.05625 13 g - - -
60 1.38629 1.38629 1.38629 1.38629
61 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
62 14 1.91091 1.78233 1.95844 0.61114 14 t - - -
63 1.38629 1.38629 1.38629 1.38629
64 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
65 15 1.98342 0.60779 2.04641 1.66785 15 c - - -
66 1.38629 1.38629 1.38629 1.38629
67 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
68 16 0.56139 2.08489 1.86185 1.89791 16 a - - -
69 1.38629 1.38629 1.38629 1.38629
70 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
71 17 1.91091 1.78233 1.95844 0.61114 17 t - - -
72 1.38629 1.38629 1.38629 1.38629
73 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
74 18 1.91091 1.78233 1.95844 0.61114 18 t - - -
75 1.38629 1.38629 1.38629 1.38629
76 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
77 19 0.56139 2.08489 1.86185 1.89791 19 a - - -
78 1.38629 1.38629 1.38629 1.38629
79 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
80 20 1.98342 0.60779 2.04641 1.66785 20 c - - -
81 1.38629 1.38629 1.38629 1.38629
82 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
83 21 0.56139 2.08489 1.86185 1.89791 21 a - - -
84 1.38629 1.38629 1.38629 1.38629
85 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
86 22 1.98342 0.60779 2.04641 1.66785 22 c - - -
87 1.38629 1.38629 1.38629 1.38629
88 0.06454 3.46574 3.46574 1.46634 0.26236 0.51083 0.91629
89 23 1.12273 2.17004 0.88086 1.92408 23 g - - -
90 1.38629 1.38629 1.38629 1.38629
91 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
92 24 2.38910 2.82844 0.25233 2.62837 24 g - - -
93 1.38629 1.38629 1.38629 1.38629
94 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
95 25 1.12273 2.17004 0.88086 1.92408 25 g - - -
96 1.38629 1.38629 1.38629 1.38629
97 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
98 26 1.08498 1.08670 1.94700 1.70340 26 a - - -
99 1.38629 1.38629 1.38629 1.38629
100 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
101 27 2.01896 1.01168 2.12953 0.95527 27 t - - -
102 1.38629 1.38629 1.38629 1.38629
103 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
104 28 2.31486 2.12647 2.41211 0.36768 28 t - - -
105 1.38629 1.38629 1.38629 1.38629
106 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
107 29 2.38910 2.82844 0.25233 2.62837 29 g - - -
108 1.38629 1.38629 1.38629 1.38629
109 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
110 30 1.84050 1.95342 1.03654 1.06480 30 g - - -
111 1.38629 1.38629 1.38629 1.38629
112 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
113 31 2.46232 0.33808 2.58153 2.07174 31 c - - -
114 1.38629 1.38629 1.38629 1.38629
115 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
116 32 2.01896 1.01168 2.12953 0.95527 32 t - - -
117 1.38629 1.38629 1.38629 1.38629
118 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
119 33 1.12273 2.17004 0.88086 1.92408 33 g - - -
120 1.38629 1.38629 1.38629 1.38629
121 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
122 34 0.28818 2.60848 2.42319 2.42940 34 a - - -
123 1.38629 1.38629 1.38629 1.38629
124 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
125 35 0.28818 2.60848 2.42319 2.42940 35 a - - -
126 1.38629 1.38629 1.38629 1.38629
127 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
128 36 1.12273 2.17004 0.88086 1.92408 36 g - - -
129 1.38629 1.38629 1.38629 1.38629
130 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
131 37 2.38910 2.82844 0.25233 2.62837 37 g - - -
132 1.38629 1.38629 1.38629 1.38629
133 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
134 38 1.84050 1.95342 1.03654 1.06480 38 g - - -
135 1.38629 1.38629 1.38629 1.38629
136 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
137 39 0.28818 2.60848 2.42319 2.42940 39 a - - -
138 1.38629 1.38629 1.38629 1.38629
139 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
140 40 2.31486 2.12647 2.41211 0.36768 40 t - - -
141 1.38629 1.38629 1.38629 1.38629
142 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
143 41 1.08498 1.08670 1.94700 1.70340 41 a - - -
144 1.38629 1.38629 1.38629 1.38629
145 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
146 42 2.46232 0.33808 2.58153 2.07174 42 c - - -
147 1.38629 1.38629 1.38629 1.38629
148 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
149 43 2.01896 1.01168 2.12953 0.95527 43 t - - -
150 1.38629 1.38629 1.38629 1.38629
151 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
152 44 2.31486 2.12647 2.41211 0.36768 44 t - - -
153 1.38629 1.38629 1.38629 1.38629
154 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
155 45 2.31486 2.12647 2.41211 0.36768 45 t - - -
156 1.38629 1.38629 1.38629 1.38629
157 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
158 46 1.84050 1.95342 1.03654 1.06480 46 g - - -
159 1.38629 1.38629 1.38629 1.38629
160 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
161 47 1.12273 2.17004 0.88086 1.92408 47 g - - -
162 1.38629 1.38629 1.38629 1.38629
163 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
164 48 2.38910 2.82844 0.25233 2.62837 48 g - - -
165 1.38629 1.38629 1.38629 1.38629
166 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
167 49 1.08498 1.08670 1.94700 1.70340 49 a - - -
168 1.38629 1.38629 1.38629 1.38629
169 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
170 50 2.46232 0.33808 2.58153 2.07174 50 c - - -
171 1.38629 1.38629 1.38629 1.38629
172 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
173 51 0.28818 2.60848 2.42319 2.42940 51 a - - -
174 1.38629 1.38629 1.38629 1.38629
175 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
176 52 1.12273 2.17004 0.88086 1.92408 52 g - - -
177 1.38629 1.38629 1.38629 1.38629
178 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
179 53 1.84050 1.95342 1.03654 1.06480 53 g - - -
180 1.38629 1.38629 1.38629 1.38629
181 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
182 54 2.01896 1.01168 2.12953 0.95527 54 t - - -
183 1.38629 1.38629 1.38629 1.38629
184 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
185 55 2.46232 0.33808 2.58153 2.07174 55 c - - -
186 1.38629 1.38629 1.38629 1.38629
187 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
188 56 2.01896 1.01168 2.12953 0.95527 56 t - - -
189 1.38629 1.38629 1.38629 1.38629
190 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
191 57 1.88401 1.14290 1.03416 1.75097 57 g - - -
192 1.38629 1.38629 1.38629 1.38629
193 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
194 58 0.28818 2.60848 2.42319 2.42940 58 a - - -
195 1.38629 1.38629 1.38629 1.38629
196 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
197 59 1.84050 1.95342 1.03654 1.06480 59 g - - -
198 1.38629 1.38629 1.38629 1.38629
199 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
200 60 1.09289 1.89038 1.88803 1.01509 60 t - - -
201 1.38629 1.38629 1.38629 1.38629
202 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
203 61 1.08498 1.08670 1.94700 1.70340 61 a - - -
204 1.38629 1.38629 1.38629 1.38629
205 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
206 62 0.28818 2.60848 2.42319 2.42940 62 a - - -
207 1.38629 1.38629 1.38629 1.38629
208 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
209 63 2.31486 2.12647 2.41211 0.36768 63 t - - -
210 1.38629 1.38629 1.38629 1.38629
211 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
212 64 1.84050 1.95342 1.03654 1.06480 64 g - - -
213 1.38629 1.38629 1.38629 1.38629
214 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
215 65 0.28818 2.60848 2.42319 2.42940 65 a - - -
216 1.38629 1.38629 1.38629 1.38629
217 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
218 66 2.01896 1.01168 2.12953 0.95527 66 t - - -
219 1.38629 1.38629 1.38629 1.38629
220 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
221 67 2.31486 2.12647 2.41211 0.36768 67 t - - -
222 1.38629 1.38629 1.38629 1.38629
223 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
224 68 2.38910 2.82844 0.25233 2.62837 68 g - - -
225 1.38629 1.38629 1.38629 1.38629
226 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
227 69 1.09289 1.89038 1.88803 1.01509 69 t - - -
228 1.38629 1.38629 1.38629 1.38629
229 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
230 70 2.38910 2.82844 0.25233 2.62837 70 g - - -
231 1.38629 1.38629 1.38629 1.38629
232 0.33647 3.73767 1.33977 1.46634 0.26236 1.09861 0.40547
233 71 1.97267 2.25870 0.46443 2.05625 71 g - - -
234 1.38629 1.38629 1.38629 1.38629
235 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
236 72 1.91091 1.78233 1.95844 0.61114 72 t - - -
237 1.38629 1.38629 1.38629 1.38629
238 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
239 73 1.97267 2.25870 0.46443 2.05625 73 g - - -
240 1.38629 1.38629 1.38629 1.38629
241 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
242 74 1.91091 1.78233 1.95844 0.61114 74 t - - -
243 1.38629 1.38629 1.38629 1.38629
244 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
245 75 1.91091 1.78233 1.95844 0.61114 75 t - - -
246 1.38629 1.38629 1.38629 1.38629
247 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
248 76 0.56139 2.08489 1.86185 1.89791 76 a - - -
249 1.38629 1.38629 1.38629 1.38629
250 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
251 77 1.98342 0.60779 2.04641 1.66785 77 c - - -
252 1.38629 1.38629 1.38629 1.38629
253 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
254 78 0.56139 2.08489 1.86185 1.89791 78 a - - -
255 1.38629 1.38629 1.38629 1.38629
256 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
257 79 0.56139 2.08489 1.86185 1.89791 79 a - - -
258 1.38629 1.38629 1.38629 1.38629
259 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
260 80 1.98342 0.60779 2.04641 1.66785 80 c - - -
261 1.38629 1.38629 1.38629 1.38629
262 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
263 81 1.91091 1.78233 1.95844 0.61114 81 t - - -
264 1.38629 1.38629 1.38629 1.38629
265 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
266 82 1.91091 1.78233 1.95844 0.61114 82 t - - -
267 1.38629 1.38629 1.38629 1.38629
268 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
269 83 1.97267 2.25870 0.46443 2.05625 83 g - - -
270 1.38629 1.38629 1.38629 1.38629
271 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
272 84 1.91091 1.78233 1.95844 0.61114 84 t - - -
273 1.38629 1.38629 1.38629 1.38629
274 0.06454 3.46574 3.46574 1.46634 0.26236 1.60944 0.22314
275 85 1.98342 0.60779 2.04641 1.66785 85 c - - -
276 1.38629 1.38629 1.38629 1.38629
277 0.03279 3.43399 * 1.46634 0.26236 0.00000 *
278 //