Mercurial > repos > dave > pipelign
diff test-data/files/long.40.hmm @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/files/long.40.hmm Mon Jun 10 16:04:10 2019 -0400 @@ -0,0 +1,278 @@ +HMMER3/f [3.2.1 | June 2018] +NAME long.40.aln +LENG 85 +MAXL 180 +ALPH DNA +RF no +MM no +CONS yes +CS no +MAP yes +DATE Tue May 28 13:12:03 2019 +NSEQ 2 +EFFN 2.000000 +CKSUM 850921081 +STATS LOCAL MSV -9.2442 0.73770 +STATS LOCAL VITERBI -10.9061 0.73770 +STATS LOCAL FORWARD -3.0276 0.73770 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.34684 1.48715 1.41637 1.30441 + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * + 1 1.09289 1.89038 1.88803 1.01509 1 t - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 2 1.84050 1.95342 1.03654 1.06480 2 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 3 1.84050 1.95342 1.03654 1.06480 3 g - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 4 1.09289 1.89038 1.88803 1.01509 4 t - 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