view test-data/files/NODE_4.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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>K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1
-----------------------CGAGCAAGCTTCACAGGAGTTAAA-------------
----AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGAT----------
------------------------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_1717_2240_0_0_0_2_0_0_4b/1
---------------------------------TCACAGGAGGTAAA-------------
----AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTA
------------------------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1
------------------------------------------------------------
------------TGACAGAAACCTAGTTGGTCCAAAATGCGAACCCAGATTGTAAGACAA
TTTTAAAAGCATTGGGACCAGC--------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1
------------------------------------------------------------
-----------------------------------------------------------A
TTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAG
-------------TAGGATGAC-------------
>K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1
------------------------------------------------------------
-----------------CTACCTCTTCTTCTGCTAGACTGCC------------------
ATTTAACAGCAGTTGAGTTGATA-------------------------------------
---------CTACTGGCCTAATTCCATGT----GT
>K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1
------------------------------------------------------------
---TTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCA------------------
GTCTAGCAGAAGAAGAGGTAGTA-------------------------------------
---------AT-------TAGATC-----------
>K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1
---TAACG--------------------------------------------------CC
ACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAAC---AA-----------G
CCCCAGAAGACGAAGGG-------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1
GTGGAGA-----------------------------------------------------
-----GAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCC---------------
--TTGGCACTTATCTGGGA-----------------------------------------
------------------CGATCT-----------
>K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1
TCCGAAGA--------------------------------------------------TC
GTCCCAGATAAGTGCCAAGGATCCGTTCACTACTCGAATGGATCTGA-------------
CTCTGTCTCT--------------------------------------------------
---------------------CTC-----------
>K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1
CCAAGTA-----------------------------------------------------
--TCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAA-----------T
CCTAGGAAAATGTCTA--------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1
-----TA-----------------------------------------------------
--TCCCCATAAGTTTCATCGATATGTTGCCCTAAGCGATGGAGCCAAA-----------T
CCTAGGAAAATGTCTAAC------------------------------------------
---------------------AGC-----------
>K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1
----TGC-----------------------------------------------------
--TCTGAAGAAAATTCCCTG----GCCTTCCCTTGTAGTAAGGCCATA-----------T
CTTCCCTAAAAAATTAGC------------------------------------------
---------------------CTGTCT--------
>K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1
AAGTGCAA----------------------------------------------------
----------------GCAATCTGATTCACCCGATTTCTTCC------------------
AATTATGATGACAGGTGTAGGTC-------------------------------------
---------CTACTAATACAGT-------------
>K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1
GAT---------------------------------------------------------
----------------------------GGTTTTATAGACATCA----------------
CTATGAAAGCCCTCATCCAAGAAA-----------------AAGTTCAGAAGTACACA--
----------------TCCCACTAGG---------
>K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1
AA----------------------------------------------------------
-------------------------------TTTATCAAGAGCC----------------
ATTTAAAAATCTGAAAACAGGAAA-----------------ATATGCAAGAATGAGGGG-
-------------TGCCCACACTAAT---------
>K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1
AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC----
-----AGGAAGCAACCACCACTCTATT---------------------------------
------TTGTGCATC---------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1
AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT----
-----AGCCAGTAGATCCTAGACTAT----------------------------------
-------AGCCCTGG---------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1
--------------------------------------GGAGCT----AGAACGAT----
-----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCT----------------
GTAGACAAATACTGGGA-------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1
----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC
TTGTGGGGCTGTTGGCTCTGGTCTGCT---------------------------------
------------------------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1
TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC
TGGTGGGGCAGTTGGCTCTGGTC-------------------------------------
------------------------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1
A-------------------------------------GGGATTATGGAAAACAGA----
-----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGG----------------
ATTAGAACATGG------------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1
------------CGGGCACAC----------------------------ACT--------
ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGG----------------
GTTCCCTAG--TTAGC--------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1
------------------------------------------------------------
-CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGG----------------
GTTCCCTAG--TTAGCCAGA----------------------------------------
-----------------GAGCTCCCA---------
>K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1
---------------------------------------------------------TGC
TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCC----------------
ATCCAATCACACTACATATT----------------------------------------
--------------------GACCAC---------
>K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1
------------GCTGCTCCC----------------------------ACCCTATCTTG
TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCC----------------
ATCCAATCA---------------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1
------------------------------------------------------------
TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCA----------------
ATTCTGAAA--CTGGATAAA----------------------------------------
---------------CAGCAGTTGTT---------
>K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1
------------------------------------------------------------
--------------------------------TGCCAAGGATCC----------------
GTTCACTAA--TCGAATGGA--------------------------TCTGTCTCTGTCTC
TCTCTCCACCTTCTTCTTCTATTCCT---------
>K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1
------------------------------------------------------------
TTCTGGGAAGTTCAAT----------------TAGGAATACCAC----------------
ATCCCGCAGGGTTAAAAAAG--------------------------AAAAAATCAGT---
---------------AACAGTACTGG---------
>K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1
------------------------------------------------------------
CTATG------TTTAC----------------TTCTAATCCCGA----------------
ATCCTGCAAAGCTAGATAAAT---------------------TGCTTGTAACTCAGTC--
---------------TTCTGATTTGT---------
>K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1
------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
TCCCAAAGAAGACAAG----ATATCCTTGATC----------------------------
------------------------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1
------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA----------------------
------------------------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1
-------------------------------------------------GGCTAATTCAC
TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACC----------------
ACCCACAAG---------------------------------------------------
----------------GCTACTTCCC---------
>K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1
---------------------------------ACAACGGAATTGG---AGGAAATGAAC
CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACT----------------
ATTTTT------------------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1
-----------------------------------AATAGTACTTT---CCTGATTCCAG
CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCC----------------
TTTGTGTG----------------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1
-----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT
CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATC----------------
AG----------------------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1
--------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT
CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA-----------------------
------------------------------------------------------------
-----------------------------------
>K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1
-----------------------------------------ACAGC---GACGAAGAGCT
CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGC----------------
AGTAAGTA----------------------------------------------------
-----------------TTACAT------------
>K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1
------------------------------------------------------------
-------------------------------------AGCCATT----------------
GCTCTCCAA--TTACTGTGA--------------------------TATTTCTCATGTTC
ATCTTGGGCCTT----AACTATTCCATCTAAAAAT