Mercurial > repos > dave > pipelign
view test-data/files/NODE_4.aln @ 0:9a3a2e04f47a draft default tip
Uploaded
author | dave |
---|---|
date | Mon, 10 Jun 2019 16:04:10 -0400 |
parents | |
children |
line wrap: on
line source
>K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1 -----------------------CGAGCAAGCTTCACAGGAGTTAAA------------- ----AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGAT---------- ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_1717_2240_0_0_0_2_0_0_4b/1 ---------------------------------TCACAGGAGGTAAA------------- ----AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTA ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1 ------------------------------------------------------------ ------------TGACAGAAACCTAGTTGGTCCAAAATGCGAACCCAGATTGTAAGACAA TTTTAAAAGCATTGGGACCAGC-------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1 ------------------------------------------------------------ -----------------------------------------------------------A TTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAG -------------TAGGATGAC------------- >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1 ------------------------------------------------------------ -----------------CTACCTCTTCTTCTGCTAGACTGCC------------------ ATTTAACAGCAGTTGAGTTGATA------------------------------------- ---------CTACTGGCCTAATTCCATGT----GT >K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1 ------------------------------------------------------------ ---TTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCA------------------ GTCTAGCAGAAGAAGAGGTAGTA------------------------------------- ---------AT-------TAGATC----------- >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1 ---TAACG--------------------------------------------------CC ACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAAC---AA-----------G CCCCAGAAGACGAAGGG------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1 GTGGAGA----------------------------------------------------- -----GAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCC--------------- --TTGGCACTTATCTGGGA----------------------------------------- ------------------CGATCT----------- >K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1 TCCGAAGA--------------------------------------------------TC GTCCCAGATAAGTGCCAAGGATCCGTTCACTACTCGAATGGATCTGA------------- CTCTGTCTCT-------------------------------------------------- ---------------------CTC----------- >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1 CCAAGTA----------------------------------------------------- --TCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAA-----------T CCTAGGAAAATGTCTA-------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1 -----TA----------------------------------------------------- --TCCCCATAAGTTTCATCGATATGTTGCCCTAAGCGATGGAGCCAAA-----------T CCTAGGAAAATGTCTAAC------------------------------------------ ---------------------AGC----------- >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1 ----TGC----------------------------------------------------- --TCTGAAGAAAATTCCCTG----GCCTTCCCTTGTAGTAAGGCCATA-----------T CTTCCCTAAAAAATTAGC------------------------------------------ ---------------------CTGTCT-------- >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1 AAGTGCAA---------------------------------------------------- ----------------GCAATCTGATTCACCCGATTTCTTCC------------------ AATTATGATGACAGGTGTAGGTC------------------------------------- ---------CTACTAATACAGT------------- >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1 GAT--------------------------------------------------------- ----------------------------GGTTTTATAGACATCA---------------- CTATGAAAGCCCTCATCCAAGAAA-----------------AAGTTCAGAAGTACACA-- ----------------TCCCACTAGG--------- >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1 AA---------------------------------------------------------- -------------------------------TTTATCAAGAGCC---------------- ATTTAAAAATCTGAAAACAGGAAA-----------------ATATGCAAGAATGAGGGG- -------------TGCCCACACTAAT--------- >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1 AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC---- -----AGGAAGCAACCACCACTCTATT--------------------------------- ------TTGTGCATC--------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1 AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT---- -----AGCCAGTAGATCCTAGACTAT---------------------------------- -------AGCCCTGG--------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1 --------------------------------------GGAGCT----AGAACGAT---- -----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCT---------------- GTAGACAAATACTGGGA------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1 ----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC TTGTGGGGCTGTTGGCTCTGGTCTGCT--------------------------------- ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1 TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC TGGTGGGGCAGTTGGCTCTGGTC------------------------------------- ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1 A-------------------------------------GGGATTATGGAAAACAGA---- -----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGG---------------- ATTAGAACATGG------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1 ------------CGGGCACAC----------------------------ACT-------- ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGG---------------- GTTCCCTAG--TTAGC-------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1 ------------------------------------------------------------ -CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGG---------------- GTTCCCTAG--TTAGCCAGA---------------------------------------- -----------------GAGCTCCCA--------- >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1 ---------------------------------------------------------TGC TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCC---------------- ATCCAATCACACTACATATT---------------------------------------- --------------------GACCAC--------- >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1 ------------GCTGCTCCC----------------------------ACCCTATCTTG TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCC---------------- ATCCAATCA--------------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1 ------------------------------------------------------------ TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCA---------------- ATTCTGAAA--CTGGATAAA---------------------------------------- ---------------CAGCAGTTGTT--------- >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1 ------------------------------------------------------------ --------------------------------TGCCAAGGATCC---------------- GTTCACTAA--TCGAATGGA--------------------------TCTGTCTCTGTCTC TCTCTCCACCTTCTTCTTCTATTCCT--------- >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1 ------------------------------------------------------------ TTCTGGGAAGTTCAAT----------------TAGGAATACCAC---------------- ATCCCGCAGGGTTAAAAAAG--------------------------AAAAAATCAGT--- ---------------AACAGTACTGG--------- >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1 ------------------------------------------------------------ CTATG------TTTAC----------------TTCTAATCCCGA---------------- ATCCTGCAAAGCTAGATAAAT---------------------TGCTTGTAACTCAGTC-- ---------------TTCTGATTTGT--------- >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1 ------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC TCCCAAAGAAGACAAG----ATATCCTTGATC---------------------------- ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1 ------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA---------------------- ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1 -------------------------------------------------GGCTAATTCAC TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACC---------------- ACCCACAAG--------------------------------------------------- ----------------GCTACTTCCC--------- >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1 ---------------------------------ACAACGGAATTGG---AGGAAATGAAC CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACT---------------- ATTTTT------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1 -----------------------------------AATAGTACTTT---CCTGATTCCAG CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCC---------------- TTTGTGTG---------------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1 -----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATC---------------- AG---------------------------------------------------------- ----------------------------------- >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1 --------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA----------------------- ------------------------------------------------------------ ----------------------------------- >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1 -----------------------------------------ACAGC---GACGAAGAGCT CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGC---------------- AGTAAGTA---------------------------------------------------- -----------------TTACAT------------ >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1 ------------------------------------------------------------ -------------------------------------AGCCATT---------------- GCTCTCCAA--TTACTGTGA--------------------------TATTTCTCATGTTC ATCTTGGGCCTT----AACTATTCCATCTAAAAAT