diff test-data/files/NODE_4.aln @ 0:9a3a2e04f47a draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/files/NODE_4.aln	Mon Jun 10 16:04:10 2019 -0400
@@ -0,0 +1,190 @@
+>K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1
+-----------------------CGAGCAAGCTTCACAGGAGTTAAA-------------
+----AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGAT----------
+------------------------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_1717_2240_0_0_0_2_0_0_4b/1
+---------------------------------TCACAGGAGGTAAA-------------
+----AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTA
+------------------------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1
+------------------------------------------------------------
+------------TGACAGAAACCTAGTTGGTCCAAAATGCGAACCCAGATTGTAAGACAA
+TTTTAAAAGCATTGGGACCAGC--------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1
+------------------------------------------------------------
+-----------------------------------------------------------A
+TTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAG
+-------------TAGGATGAC-------------
+>K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1
+------------------------------------------------------------
+-----------------CTACCTCTTCTTCTGCTAGACTGCC------------------
+ATTTAACAGCAGTTGAGTTGATA-------------------------------------
+---------CTACTGGCCTAATTCCATGT----GT
+>K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1
+------------------------------------------------------------
+---TTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCA------------------
+GTCTAGCAGAAGAAGAGGTAGTA-------------------------------------
+---------AT-------TAGATC-----------
+>K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1
+---TAACG--------------------------------------------------CC
+ACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAAC---AA-----------G
+CCCCAGAAGACGAAGGG-------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1
+GTGGAGA-----------------------------------------------------
+-----GAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCC---------------
+--TTGGCACTTATCTGGGA-----------------------------------------
+------------------CGATCT-----------
+>K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1
+TCCGAAGA--------------------------------------------------TC
+GTCCCAGATAAGTGCCAAGGATCCGTTCACTACTCGAATGGATCTGA-------------
+CTCTGTCTCT--------------------------------------------------
+---------------------CTC-----------
+>K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1
+CCAAGTA-----------------------------------------------------
+--TCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAA-----------T
+CCTAGGAAAATGTCTA--------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1
+-----TA-----------------------------------------------------
+--TCCCCATAAGTTTCATCGATATGTTGCCCTAAGCGATGGAGCCAAA-----------T
+CCTAGGAAAATGTCTAAC------------------------------------------
+---------------------AGC-----------
+>K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1
+----TGC-----------------------------------------------------
+--TCTGAAGAAAATTCCCTG----GCCTTCCCTTGTAGTAAGGCCATA-----------T
+CTTCCCTAAAAAATTAGC------------------------------------------
+---------------------CTGTCT--------
+>K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1
+AAGTGCAA----------------------------------------------------
+----------------GCAATCTGATTCACCCGATTTCTTCC------------------
+AATTATGATGACAGGTGTAGGTC-------------------------------------
+---------CTACTAATACAGT-------------
+>K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1
+GAT---------------------------------------------------------
+----------------------------GGTTTTATAGACATCA----------------
+CTATGAAAGCCCTCATCCAAGAAA-----------------AAGTTCAGAAGTACACA--
+----------------TCCCACTAGG---------
+>K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1
+AA----------------------------------------------------------
+-------------------------------TTTATCAAGAGCC----------------
+ATTTAAAAATCTGAAAACAGGAAA-----------------ATATGCAAGAATGAGGGG-
+-------------TGCCCACACTAAT---------
+>K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1
+AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC----
+-----AGGAAGCAACCACCACTCTATT---------------------------------
+------TTGTGCATC---------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1
+AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT----
+-----AGCCAGTAGATCCTAGACTAT----------------------------------
+-------AGCCCTGG---------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1
+--------------------------------------GGAGCT----AGAACGAT----
+-----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCT----------------
+GTAGACAAATACTGGGA-------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1
+----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC
+TTGTGGGGCTGTTGGCTCTGGTCTGCT---------------------------------
+------------------------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1
+TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC
+TGGTGGGGCAGTTGGCTCTGGTC-------------------------------------
+------------------------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1
+A-------------------------------------GGGATTATGGAAAACAGA----
+-----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGG----------------
+ATTAGAACATGG------------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1
+------------CGGGCACAC----------------------------ACT--------
+ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGG----------------
+GTTCCCTAG--TTAGC--------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1
+------------------------------------------------------------
+-CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGG----------------
+GTTCCCTAG--TTAGCCAGA----------------------------------------
+-----------------GAGCTCCCA---------
+>K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1
+---------------------------------------------------------TGC
+TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCC----------------
+ATCCAATCACACTACATATT----------------------------------------
+--------------------GACCAC---------
+>K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1
+------------GCTGCTCCC----------------------------ACCCTATCTTG
+TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCC----------------
+ATCCAATCA---------------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1
+------------------------------------------------------------
+TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCA----------------
+ATTCTGAAA--CTGGATAAA----------------------------------------
+---------------CAGCAGTTGTT---------
+>K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1
+------------------------------------------------------------
+--------------------------------TGCCAAGGATCC----------------
+GTTCACTAA--TCGAATGGA--------------------------TCTGTCTCTGTCTC
+TCTCTCCACCTTCTTCTTCTATTCCT---------
+>K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1
+------------------------------------------------------------
+TTCTGGGAAGTTCAAT----------------TAGGAATACCAC----------------
+ATCCCGCAGGGTTAAAAAAG--------------------------AAAAAATCAGT---
+---------------AACAGTACTGG---------
+>K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1
+------------------------------------------------------------
+CTATG------TTTAC----------------TTCTAATCCCGA----------------
+ATCCTGCAAAGCTAGATAAAT---------------------TGCTTGTAACTCAGTC--
+---------------TTCTGATTTGT---------
+>K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1
+------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
+TCCCAAAGAAGACAAG----ATATCCTTGATC----------------------------
+------------------------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1
+------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
+TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA----------------------
+------------------------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1
+-------------------------------------------------GGCTAATTCAC
+TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACC----------------
+ACCCACAAG---------------------------------------------------
+----------------GCTACTTCCC---------
+>K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1
+---------------------------------ACAACGGAATTGG---AGGAAATGAAC
+CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACT----------------
+ATTTTT------------------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1
+-----------------------------------AATAGTACTTT---CCTGATTCCAG
+CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCC----------------
+TTTGTGTG----------------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1
+-----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT
+CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATC----------------
+AG----------------------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1
+--------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT
+CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA-----------------------
+------------------------------------------------------------
+-----------------------------------
+>K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1
+-----------------------------------------ACAGC---GACGAAGAGCT
+CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGC----------------
+AGTAAGTA----------------------------------------------------
+-----------------TTACAT------------
+>K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1
+------------------------------------------------------------
+-------------------------------------AGCCATT----------------
+GCTCTCCAA--TTACTGTGA--------------------------TATTTCTCATGTTC
+ATCTTGGGCCTT----AACTATTCCATCTAAAAAT