Mercurial > repos > dave > pipelign
diff test-data/files/NODE_4.aln @ 0:9a3a2e04f47a draft default tip
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author | dave |
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date | Mon, 10 Jun 2019 16:04:10 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/files/NODE_4.aln Mon Jun 10 16:04:10 2019 -0400 @@ -0,0 +1,190 @@ +>K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1 +-----------------------CGAGCAAGCTTCACAGGAGTTAAA------------- +----AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGAT---------- +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_1717_2240_0_0_0_2_0_0_4b/1 +---------------------------------TCACAGGAGGTAAA------------- +----AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTA +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1 +------------------------------------------------------------ +------------TGACAGAAACCTAGTTGGTCCAAAATGCGAACCCAGATTGTAAGACAA +TTTTAAAAGCATTGGGACCAGC-------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1 +------------------------------------------------------------ +-----------------------------------------------------------A +TTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAG +-------------TAGGATGAC------------- +>K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1 +------------------------------------------------------------ +-----------------CTACCTCTTCTTCTGCTAGACTGCC------------------ +ATTTAACAGCAGTTGAGTTGATA------------------------------------- +---------CTACTGGCCTAATTCCATGT----GT +>K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1 +------------------------------------------------------------ +---TTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCA------------------ +GTCTAGCAGAAGAAGAGGTAGTA------------------------------------- +---------AT-------TAGATC----------- +>K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1 +---TAACG--------------------------------------------------CC +ACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAAC---AA-----------G +CCCCAGAAGACGAAGGG------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1 +GTGGAGA----------------------------------------------------- +-----GAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCC--------------- +--TTGGCACTTATCTGGGA----------------------------------------- +------------------CGATCT----------- +>K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1 +TCCGAAGA--------------------------------------------------TC +GTCCCAGATAAGTGCCAAGGATCCGTTCACTACTCGAATGGATCTGA------------- +CTCTGTCTCT-------------------------------------------------- +---------------------CTC----------- +>K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1 +CCAAGTA----------------------------------------------------- +--TCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAA-----------T +CCTAGGAAAATGTCTA-------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1 +-----TA----------------------------------------------------- +--TCCCCATAAGTTTCATCGATATGTTGCCCTAAGCGATGGAGCCAAA-----------T +CCTAGGAAAATGTCTAAC------------------------------------------ +---------------------AGC----------- +>K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1 +----TGC----------------------------------------------------- +--TCTGAAGAAAATTCCCTG----GCCTTCCCTTGTAGTAAGGCCATA-----------T +CTTCCCTAAAAAATTAGC------------------------------------------ +---------------------CTGTCT-------- +>K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1 +AAGTGCAA---------------------------------------------------- +----------------GCAATCTGATTCACCCGATTTCTTCC------------------ +AATTATGATGACAGGTGTAGGTC------------------------------------- +---------CTACTAATACAGT------------- +>K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1 +GAT--------------------------------------------------------- +----------------------------GGTTTTATAGACATCA---------------- +CTATGAAAGCCCTCATCCAAGAAA-----------------AAGTTCAGAAGTACACA-- +----------------TCCCACTAGG--------- +>K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1 +AA---------------------------------------------------------- +-------------------------------TTTATCAAGAGCC---------------- +ATTTAAAAATCTGAAAACAGGAAA-----------------ATATGCAAGAATGAGGGG- +-------------TGCCCACACTAAT--------- +>K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1 +AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC---- +-----AGGAAGCAACCACCACTCTATT--------------------------------- +------TTGTGCATC--------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1 +AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT---- +-----AGCCAGTAGATCCTAGACTAT---------------------------------- +-------AGCCCTGG--------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1 +--------------------------------------GGAGCT----AGAACGAT---- +-----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCT---------------- +GTAGACAAATACTGGGA------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1 +----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC +TTGTGGGGCTGTTGGCTCTGGTCTGCT--------------------------------- +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1 +TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC +TGGTGGGGCAGTTGGCTCTGGTC------------------------------------- +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1 +A-------------------------------------GGGATTATGGAAAACAGA---- +-----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGG---------------- +ATTAGAACATGG------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1 +------------CGGGCACAC----------------------------ACT-------- +ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGG---------------- +GTTCCCTAG--TTAGC-------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1 +------------------------------------------------------------ +-CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGG---------------- +GTTCCCTAG--TTAGCCAGA---------------------------------------- +-----------------GAGCTCCCA--------- +>K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1 +---------------------------------------------------------TGC +TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCC---------------- +ATCCAATCACACTACATATT---------------------------------------- +--------------------GACCAC--------- +>K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1 +------------GCTGCTCCC----------------------------ACCCTATCTTG +TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCC---------------- +ATCCAATCA--------------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1 +------------------------------------------------------------ +TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCA---------------- +ATTCTGAAA--CTGGATAAA---------------------------------------- +---------------CAGCAGTTGTT--------- +>K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1 +------------------------------------------------------------ +--------------------------------TGCCAAGGATCC---------------- +GTTCACTAA--TCGAATGGA--------------------------TCTGTCTCTGTCTC +TCTCTCCACCTTCTTCTTCTATTCCT--------- +>K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1 +------------------------------------------------------------ +TTCTGGGAAGTTCAAT----------------TAGGAATACCAC---------------- +ATCCCGCAGGGTTAAAAAAG--------------------------AAAAAATCAGT--- +---------------AACAGTACTGG--------- +>K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1 +------------------------------------------------------------ +CTATG------TTTAC----------------TTCTAATCCCGA---------------- +ATCCTGCAAAGCTAGATAAAT---------------------TGCTTGTAACTCAGTC-- +---------------TTCTGATTTGT--------- +>K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1 +------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC +TCCCAAAGAAGACAAG----ATATCCTTGATC---------------------------- +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1 +------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC +TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA---------------------- +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1 +-------------------------------------------------GGCTAATTCAC +TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACC---------------- +ACCCACAAG--------------------------------------------------- +----------------GCTACTTCCC--------- +>K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1 +---------------------------------ACAACGGAATTGG---AGGAAATGAAC +CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACT---------------- +ATTTTT------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1 +-----------------------------------AATAGTACTTT---CCTGATTCCAG +CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCC---------------- +TTTGTGTG---------------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1 +-----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT +CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATC---------------- +AG---------------------------------------------------------- +----------------------------------- +>K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1 +--------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT +CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA----------------------- +------------------------------------------------------------ +----------------------------------- +>K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1 +-----------------------------------------ACAGC---GACGAAGAGCT +CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGC---------------- +AGTAAGTA---------------------------------------------------- +-----------------TTACAT------------ +>K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1 +------------------------------------------------------------ +-------------------------------------AGCCATT---------------- +GCTCTCCAA--TTACTGTGA--------------------------TATTTCTCATGTTC +ATCTTGGGCCTT----AACTATTCCATCTAAAAAT