Mercurial > repos > dave > pipelign
comparison test-data/files/NODE_4.aln @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:9a3a2e04f47a |
|---|---|
| 1 >K03455|HIVHXB2CG_1707_2205_1_0_0_3_0_0_48/1 | |
| 2 -----------------------CGAGCAAGCTTCACAGGAGTTAAA------------- | |
| 3 ----AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGAT---------- | |
| 4 ------------------------------------------------------------ | |
| 5 ----------------------------------- | |
| 6 >K03455|HIVHXB2CG_1717_2240_0_0_0_2_0_0_4b/1 | |
| 7 ---------------------------------TCACAGGAGGTAAA------------- | |
| 8 ----AAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTA | |
| 9 ------------------------------------------------------------ | |
| 10 ----------------------------------- | |
| 11 >K03455|HIVHXB2CG_1739_2301_2_0_0_2_0_0_33/1 | |
| 12 ------------------------------------------------------------ | |
| 13 ------------TGACAGAAACCTAGTTGGTCCAAAATGCGAACCCAGATTGTAAGACAA | |
| 14 TTTTAAAAGCATTGGGACCAGC-------------------------------------- | |
| 15 ----------------------------------- | |
| 16 >K03455|HIVHXB2CG_1786_2269_1_0_0_1_0_0_39/1 | |
| 17 ------------------------------------------------------------ | |
| 18 -----------------------------------------------------------A | |
| 19 TTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAG | |
| 20 -------------TAGGATGAC------------- | |
| 21 >K03455|HIVHXB2CG_6501_7035_0_0_0_0_0_0_b/1 | |
| 22 ------------------------------------------------------------ | |
| 23 -----------------CTACCTCTTCTTCTGCTAGACTGCC------------------ | |
| 24 ATTTAACAGCAGTTGAGTTGATA------------------------------------- | |
| 25 ---------CTACTGGCCTAATTCCATGT----GT | |
| 26 >K03455|HIVHXB2CG_6976_7493_0_0_0_0_0_0_12/1 | |
| 27 ------------------------------------------------------------ | |
| 28 ---TTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCA------------------ | |
| 29 GTCTAGCAGAAGAAGAGGTAGTA------------------------------------- | |
| 30 ---------AT-------TAGATC----------- | |
| 31 >K03455|HIVHXB2CG_5516_5958_3_0_0_2_0_0_20/1 | |
| 32 ---TAACG--------------------------------------------------CC | |
| 33 ACCTTTGCCTAGTGTTACGAAACTGCCAGAGGATAGATGGAAC---AA-----------G | |
| 34 CCCCAGAAGACGAAGGG------------------------------------------- | |
| 35 ----------------------------------- | |
| 36 >K03455|HIVHXB2CG_8434_8946_0_0_0_1_0_0_21/1 | |
| 37 GTGGAGA----------------------------------------------------- | |
| 38 -----GAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCC--------------- | |
| 39 --TTGGCACTTATCTGGGA----------------------------------------- | |
| 40 ------------------CGATCT----------- | |
| 41 >K03455|HIVHXB2CG_7957_8508_2_0_0_2_1_0_2c/1 | |
| 42 TCCGAAGA--------------------------------------------------TC | |
| 43 GTCCCAGATAAGTGCCAAGGATCCGTTCACTACTCGAATGGATCTGA------------- | |
| 44 CTCTGTCTCT-------------------------------------------------- | |
| 45 ---------------------CTC----------- | |
| 46 >K03455|HIVHXB2CG_5251_5720_0_0_0_1_0_0_4/1 | |
| 47 CCAAGTA----------------------------------------------------- | |
| 48 --TCCCCATAAGTTTCATAGATATGATGCCCTAAGCCATGGAGCCAAA-----------T | |
| 49 CCTAGGAAAATGTCTA-------------------------------------------- | |
| 50 ----------------------------------- | |
| 51 >K03455|HIVHXB2CG_5199_5715_1_0_0_2_0_0_1a/1 | |
| 52 -----TA----------------------------------------------------- | |
| 53 --TCCCCATAAGTTTCATCGATATGTTGCCCTAAGCGATGGAGCCAAA-----------T | |
| 54 CCTAGGAAAATGTCTAAC------------------------------------------ | |
| 55 ---------------------AGC----------- | |
| 56 >K03455|HIVHXB2CG_1672_2143_3_0_0_2_0_0_1d/1 | |
| 57 ----TGC----------------------------------------------------- | |
| 58 --TCTGAAGAAAATTCCCTG----GCCTTCCCTTGTAGTAAGGCCATA-----------T | |
| 59 CTTCCCTAAAAAATTAGC------------------------------------------ | |
| 60 ---------------------CTGTCT-------- | |
| 61 >K03455|HIVHXB2CG_2020_2541_3_0_0_6_0_0_2f/1 | |
| 62 AAGTGCAA---------------------------------------------------- | |
| 63 ----------------GCAATCTGATTCACCCGATTTCTTCC------------------ | |
| 64 AATTATGATGACAGGTGTAGGTC------------------------------------- | |
| 65 ---------CTACTAATACAGT------------- | |
| 66 >K03455|HIVHXB2CG_5150_5584_1_0_0_2_0_0_42/1 | |
| 67 GAT--------------------------------------------------------- | |
| 68 ----------------------------GGTTTTATAGACATCA---------------- | |
| 69 CTATGAAAGCCCTCATCCAAGAAA-----------------AAGTTCAGAAGTACACA-- | |
| 70 ----------------TCCCACTAGG--------- | |
| 71 >K03455|HIVHXB2CG_3569_4048_0_0_0_4_0_0_3e/1 | |
| 72 AA---------------------------------------------------------- | |
| 73 -------------------------------TTTATCAAGAGCC---------------- | |
| 74 ATTTAAAAATCTGAAAACAGGAAA-----------------ATATGCAAGAATGAGGGG- | |
| 75 -------------TGCCCACACTAAT--------- | |
| 76 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1 | |
| 77 AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC---- | |
| 78 -----AGGAAGCAACCACCACTCTATT--------------------------------- | |
| 79 ------TTGTGCATC--------------------------------------------- | |
| 80 ----------------------------------- | |
| 81 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1 | |
| 82 AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT---- | |
| 83 -----AGCCAGTAGATCCTAGACTAT---------------------------------- | |
| 84 -------AGCCCTGG--------------------------------------------- | |
| 85 ----------------------------------- | |
| 86 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1 | |
| 87 --------------------------------------GGAGCT----AGAACGAT---- | |
| 88 -----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCT---------------- | |
| 89 GTAGACAAATACTGGGA------------------------------------------- | |
| 90 ----------------------------------- | |
| 91 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1 | |
| 92 ----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC | |
| 93 TTGTGGGGCTGTTGGCTCTGGTCTGCT--------------------------------- | |
| 94 ------------------------------------------------------------ | |
| 95 ----------------------------------- | |
| 96 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1 | |
| 97 TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC | |
| 98 TGGTGGGGCAGTTGGCTCTGGTC------------------------------------- | |
| 99 ------------------------------------------------------------ | |
| 100 ----------------------------------- | |
| 101 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1 | |
| 102 A-------------------------------------GGGATTATGGAAAACAGA---- | |
| 103 -----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGG---------------- | |
| 104 ATTAGAACATGG------------------------------------------------ | |
| 105 ----------------------------------- | |
| 106 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1 | |
| 107 ------------CGGGCACAC----------------------------ACT-------- | |
| 108 ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGG---------------- | |
| 109 GTTCCCTAG--TTAGC-------------------------------------------- | |
| 110 ----------------------------------- | |
| 111 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1 | |
| 112 ------------------------------------------------------------ | |
| 113 -CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGG---------------- | |
| 114 GTTCCCTAG--TTAGCCAGA---------------------------------------- | |
| 115 -----------------GAGCTCCCA--------- | |
| 116 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1 | |
| 117 ---------------------------------------------------------TGC | |
| 118 TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCC---------------- | |
| 119 ATCCAATCACACTACATATT---------------------------------------- | |
| 120 --------------------GACCAC--------- | |
| 121 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1 | |
| 122 ------------GCTGCTCCC----------------------------ACCCTATCTTG | |
| 123 TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCC---------------- | |
| 124 ATCCAATCA--------------------------------------------------- | |
| 125 ----------------------------------- | |
| 126 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1 | |
| 127 ------------------------------------------------------------ | |
| 128 TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCA---------------- | |
| 129 ATTCTGAAA--CTGGATAAA---------------------------------------- | |
| 130 ---------------CAGCAGTTGTT--------- | |
| 131 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1 | |
| 132 ------------------------------------------------------------ | |
| 133 --------------------------------TGCCAAGGATCC---------------- | |
| 134 GTTCACTAA--TCGAATGGA--------------------------TCTGTCTCTGTCTC | |
| 135 TCTCTCCACCTTCTTCTTCTATTCCT--------- | |
| 136 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1 | |
| 137 ------------------------------------------------------------ | |
| 138 TTCTGGGAAGTTCAAT----------------TAGGAATACCAC---------------- | |
| 139 ATCCCGCAGGGTTAAAAAAG--------------------------AAAAAATCAGT--- | |
| 140 ---------------AACAGTACTGG--------- | |
| 141 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1 | |
| 142 ------------------------------------------------------------ | |
| 143 CTATG------TTTAC----------------TTCTAATCCCGA---------------- | |
| 144 ATCCTGCAAAGCTAGATAAAT---------------------TGCTTGTAACTCAGTC-- | |
| 145 ---------------TTCTGATTTGT--------- | |
| 146 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1 | |
| 147 ------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC | |
| 148 TCCCAAAGAAGACAAG----ATATCCTTGATC---------------------------- | |
| 149 ------------------------------------------------------------ | |
| 150 ----------------------------------- | |
| 151 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1 | |
| 152 ------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC | |
| 153 TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA---------------------- | |
| 154 ------------------------------------------------------------ | |
| 155 ----------------------------------- | |
| 156 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1 | |
| 157 -------------------------------------------------GGCTAATTCAC | |
| 158 TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACC---------------- | |
| 159 ACCCACAAG--------------------------------------------------- | |
| 160 ----------------GCTACTTCCC--------- | |
| 161 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1 | |
| 162 ---------------------------------ACAACGGAATTGG---AGGAAATGAAC | |
| 163 CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACT---------------- | |
| 164 ATTTTT------------------------------------------------------ | |
| 165 ----------------------------------- | |
| 166 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1 | |
| 167 -----------------------------------AATAGTACTTT---CCTGATTCCAG | |
| 168 CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCC---------------- | |
| 169 TTTGTGTG---------------------------------------------------- | |
| 170 ----------------------------------- | |
| 171 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1 | |
| 172 -----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT | |
| 173 CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATC---------------- | |
| 174 AG---------------------------------------------------------- | |
| 175 ----------------------------------- | |
| 176 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1 | |
| 177 --------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT | |
| 178 CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA----------------------- | |
| 179 ------------------------------------------------------------ | |
| 180 ----------------------------------- | |
| 181 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1 | |
| 182 -----------------------------------------ACAGC---GACGAAGAGCT | |
| 183 CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGC---------------- | |
| 184 AGTAAGTA---------------------------------------------------- | |
| 185 -----------------TTACAT------------ | |
| 186 >K03455|HIVHXB2CG_3875_4298_2_0_0_1_0_0_24/1 | |
| 187 ------------------------------------------------------------ | |
| 188 -------------------------------------AGCCATT---------------- | |
| 189 GCTCTCCAA--TTACTGTGA--------------------------TATTTCTCATGTTC | |
| 190 ATCTTGGGCCTT----AACTATTCCATCTAAAAAT |