diff test-data/files/NODE_12.aln @ 0:9a3a2e04f47a draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/files/NODE_12.aln	Mon Jun 10 16:04:10 2019 -0400
@@ -0,0 +1,105 @@
+>K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1
+------------------------------------------------------------
+--------------------GATCCTGC-------------ATATAAGCAGCAGCTTTTT
+GCCTTTACTGGTTCTCTCTGGTTAGACCAGATCTGAGCCTGGG-----------------
+------
+>K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1
+------------------------------------------------------------
+-------------------CAGATACCT-------------AAATGATCAACAGCTCCTG
+GGGATT-TGGGGTTGCTCTGGAAAACTCATTTGCACCCCTGCT-----------------
+------
+>K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1
+GTCTGG----------------------------GGCATCAAGCAGCTCCAGG-------
+CAAGAATGCTGGCTGTGGAAAGATACCT-------------AAAGGATCAACAGCTCC--
+------------------------------------------------------------
+------
+>K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1
+------------------------------------------------------------
+-----------ACAGTAGAAAAATTCCCCTCCACCATTAAAACTGTGGTTACAATATC--
+-------TGGGTCCCCTCC-------------TGAGGATTGGT-----------------
+------
+>K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1
+------------------------------------------------------------
+-----------ACAGTAGAAAAATTCCCCTCCACAATTAAAACTGTGGTTACAATTTC--
+-------TGGGTCCCCTCC-------------TGAGGATTGCT-----------------
+------
+>K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1
+TCCTG----------------------------------------ACTCCAA--------
+----------TACTGTAGGAGATTCCAC-----------------------CAATATT--
+-------TGAGGGCTTCCCACCCCCTGCGTCCCAGAAGTT--------------------
+------
+>K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1
+--------------------------------------------ATCCTCAT--------
+-----GCATCTGTTCTACCATGTCATTTTT-----------CCACATGTTAAAATTTTCT
+GT-----CACATTTAC---CAATACT----------------------------------
+------
+>K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1
+--------------------------------------------TT--------------
+-------GGTAAATGTGACAGAAAATTTTA-----------ACATGTGGAAAAATGACAT
+GG-----TAGA---AC---AGATGCA----------------------TGAGGATATAA-
+------
+>K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1
+------------------------------------------------------------
+-------GGTAAATGTGACAGAAAATTTTA-----------ACATGTGGAAAAATGACAT
+GG-----TAGA---AC---AGATGCA----------------------TGAGGATATAAT
+-----C
+>K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1
+------------------------------------------------------------
+------------------------------------------------TTAAAATTTTCT
+GT-----CACATTTAC---CAATACTACTTCTTGTGGGTTGGGGTCTGTGGGTACACAGG
+CATGTG
+>K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1
+------------------------------------------------------------
+------CACCCATCCAAAGGAATTGAGGTT-----------CTTT---CTGATGTTTTTT
+GT-----CTGGTGTGG---TAAGTCCCCACCTCGACAG----------------------
+------
+>K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1
+CTTTA----------------------------------TATTTTTTCTTAC--------
+-----CCCCTGGCCTTAACCGAATTTTTTC-----------CCATCGATCTAATTCTCC-
+-------CCCGCTTAA--------------------------------------------
+------
+>K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1
+TCC------------------------------------CTGTTCG--------------
+-------GGCGCCACTGCTAGAGATTTTCC-----------ACACTGACTAAAAGGGTCT
+GA-----GGGA---TCTCTAGTTACC----------------------------------
+------
+>K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1
+----------------------------------AGTAAGTAGTACCTGTAAC--GCAAC
+CTATACCAATAG-TAGCAATAGTAGCATTA-----------GTAGTAGCACTAATAAT--
+------------------------------------------------------------
+------
+>K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1
+--------------------------------------------------------CAAC
+CTATACCAATAG-TAGCAATAGTAGCATTA-----------GTAGTAGCAATAATAATAG
+CAATAGTTGAGTGGTC--------------------------------------------
+CA----
+>K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1
+ACAGTAA----TTGGAG--------------AGCAATGGCTAGTGATTTTAACCTGCCAC
+CTGTAGTAGCAA-AAGAAATAGTAGCCCG-------------------------------
+------------------------------------------------------------
+------
+>K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1
+------------------------------------------------------------
+-TATGGTACCAGTTAGAGAAAGAACCCCTA-----------GTAGGAGCAGAAACCTTCT
+ATGTAGATGGGGCAGC--------------------------------------------
+TAACAG
+>K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1
+-------------------------------------AGTTCATGTATCCAGT-------
+---GGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGGCTGAAACAGCATAT---
+------------------------------------------------------------
+------
+>K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1
+ATTGTACACATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGT-------
+---GGATATATAGAAGCAGA----------------------------------------
+------------------------------------------------------------
+------
+>K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1
+------------------------------------------------------------
+------TATAAAGACGCAGAAGTTATTCCAGCATACACAGGGCAGGAAACAGCATATTTT
+CTTTT--CAAATTAG-----------------------------CAG-------------
+------
+>K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1
+------------------------------------------------------------
+------TGCTAA-----------------------------TTTTAAAAGACAATATTCT
+GTTTC--CTGCCCTGTTTCTGCTGGAATAACTTCTGCTTCTATATAT-------------
+------