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comparison test-data/files/NODE_12.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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-1:000000000000 0:9a3a2e04f47a
1 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1
2 ------------------------------------------------------------
3 --------------------GATCCTGC-------------ATATAAGCAGCAGCTTTTT
4 GCCTTTACTGGTTCTCTCTGGTTAGACCAGATCTGAGCCTGGG-----------------
5 ------
6 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1
7 ------------------------------------------------------------
8 -------------------CAGATACCT-------------AAATGATCAACAGCTCCTG
9 GGGATT-TGGGGTTGCTCTGGAAAACTCATTTGCACCCCTGCT-----------------
10 ------
11 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1
12 GTCTGG----------------------------GGCATCAAGCAGCTCCAGG-------
13 CAAGAATGCTGGCTGTGGAAAGATACCT-------------AAAGGATCAACAGCTCC--
14 ------------------------------------------------------------
15 ------
16 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1
17 ------------------------------------------------------------
18 -----------ACAGTAGAAAAATTCCCCTCCACCATTAAAACTGTGGTTACAATATC--
19 -------TGGGTCCCCTCC-------------TGAGGATTGGT-----------------
20 ------
21 >K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1
22 ------------------------------------------------------------
23 -----------ACAGTAGAAAAATTCCCCTCCACAATTAAAACTGTGGTTACAATTTC--
24 -------TGGGTCCCCTCC-------------TGAGGATTGCT-----------------
25 ------
26 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1
27 TCCTG----------------------------------------ACTCCAA--------
28 ----------TACTGTAGGAGATTCCAC-----------------------CAATATT--
29 -------TGAGGGCTTCCCACCCCCTGCGTCCCAGAAGTT--------------------
30 ------
31 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1
32 --------------------------------------------ATCCTCAT--------
33 -----GCATCTGTTCTACCATGTCATTTTT-----------CCACATGTTAAAATTTTCT
34 GT-----CACATTTAC---CAATACT----------------------------------
35 ------
36 >K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1
37 --------------------------------------------TT--------------
38 -------GGTAAATGTGACAGAAAATTTTA-----------ACATGTGGAAAAATGACAT
39 GG-----TAGA---AC---AGATGCA----------------------TGAGGATATAA-
40 ------
41 >K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1
42 ------------------------------------------------------------
43 -------GGTAAATGTGACAGAAAATTTTA-----------ACATGTGGAAAAATGACAT
44 GG-----TAGA---AC---AGATGCA----------------------TGAGGATATAAT
45 -----C
46 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1
47 ------------------------------------------------------------
48 ------------------------------------------------TTAAAATTTTCT
49 GT-----CACATTTAC---CAATACTACTTCTTGTGGGTTGGGGTCTGTGGGTACACAGG
50 CATGTG
51 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1
52 ------------------------------------------------------------
53 ------CACCCATCCAAAGGAATTGAGGTT-----------CTTT---CTGATGTTTTTT
54 GT-----CTGGTGTGG---TAAGTCCCCACCTCGACAG----------------------
55 ------
56 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1
57 CTTTA----------------------------------TATTTTTTCTTAC--------
58 -----CCCCTGGCCTTAACCGAATTTTTTC-----------CCATCGATCTAATTCTCC-
59 -------CCCGCTTAA--------------------------------------------
60 ------
61 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1
62 TCC------------------------------------CTGTTCG--------------
63 -------GGCGCCACTGCTAGAGATTTTCC-----------ACACTGACTAAAAGGGTCT
64 GA-----GGGA---TCTCTAGTTACC----------------------------------
65 ------
66 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1
67 ----------------------------------AGTAAGTAGTACCTGTAAC--GCAAC
68 CTATACCAATAG-TAGCAATAGTAGCATTA-----------GTAGTAGCACTAATAAT--
69 ------------------------------------------------------------
70 ------
71 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1
72 --------------------------------------------------------CAAC
73 CTATACCAATAG-TAGCAATAGTAGCATTA-----------GTAGTAGCAATAATAATAG
74 CAATAGTTGAGTGGTC--------------------------------------------
75 CA----
76 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1
77 ACAGTAA----TTGGAG--------------AGCAATGGCTAGTGATTTTAACCTGCCAC
78 CTGTAGTAGCAA-AAGAAATAGTAGCCCG-------------------------------
79 ------------------------------------------------------------
80 ------
81 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1
82 ------------------------------------------------------------
83 -TATGGTACCAGTTAGAGAAAGAACCCCTA-----------GTAGGAGCAGAAACCTTCT
84 ATGTAGATGGGGCAGC--------------------------------------------
85 TAACAG
86 >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1
87 -------------------------------------AGTTCATGTATCCAGT-------
88 ---GGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGGCTGAAACAGCATAT---
89 ------------------------------------------------------------
90 ------
91 >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1
92 ATTGTACACATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGT-------
93 ---GGATATATAGAAGCAGA----------------------------------------
94 ------------------------------------------------------------
95 ------
96 >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1
97 ------------------------------------------------------------
98 ------TATAAAGACGCAGAAGTTATTCCAGCATACACAGGGCAGGAAACAGCATATTTT
99 CTTTT--CAAATTAG-----------------------------CAG-------------
100 ------
101 >K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1
102 ------------------------------------------------------------
103 ------TGCTAA-----------------------------TTTTAAAAGACAATATTCT
104 GTTTC--CTGCCCTGTTTCTGCTGGAATAACTTCTGCTTCTATATAT-------------
105 ------