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annotate test-data/files/NODE_5.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1
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2 ---------------------------------------------------------TTA
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3 TCAGAAGG----------------AGCCACCCCACAAGATTTAAAC--ACCATGCTACAC
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4 CC-------AGTGGGGGGACATCAAGCAGCCA--
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5 >K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1
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6 -----------------------------------------------GTTTTCAGCATTA
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7 TCAGAAGG----------------AGCCACCCCACAAGATTTAAAC--ACCATGCTAAAC
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8 AC-------AGTGGGGGGACAT------------
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9 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1
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10 -------------------------------CAGAAGTGATACCCATGTTTTCAGCATTA
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11 TCAGAAGG----------------AGCCACCCCACAAGATTTAAAC--ACCATGCTAAA-
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12 ----------------------------------
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13 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1
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14 -------------------------------TGT-------------AACACCTCAGTCA
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15 TTA------CACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCC--CATACATTATTG
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16 TG--------------------------------
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17 >K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1
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18 -------------------------------ATG-------------TATG---------
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19 ------------GGAATTGGCTGAAAGGATACCTTTGGACAGGCCT--GAGTAATGACTG
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20 AGGTGTTACAA---------CTTGTC--------
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21 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1
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22 -------------------------------AA--------------GCTTGTGTAATTG
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23 TTAATTTC---TCTGTCCCACTCCATCCAGGTCGTGTGATTCCAAC--TCTGTTCCAG--
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24 ------------------------AG--------
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25 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1
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26 -------------------------------AA--------------AATTTCAAA----
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27 ------------------------AATTGGGCCTGAAAATCCATAC--AATACTCCAGTA
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28 TT-TGCCATAAAGAAAAAAGACAGTA--------
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29 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1
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30 -------------------------------GC--------------CTGCATGGAATGG
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31 ATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGAGAGCCACCT--AGCAATTCA---
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32 ----------------------------------
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33 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1
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34 -------------------------------GTA-------------CTTTCTATAGTGA
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35 ATAGAGTTAGGCAGGTATATTCACCATTATCGTTTGAGACCCACCT--CCCAACCC----
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36 ----------------------------------
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37 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1
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38 -----------------------------------------------------GGT----
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39 ------------------------GATATGGGCTGATGTACCATTT--GCCCCTGGATGT
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40 TC-TGCACTATAGGGTAATTTTGGCTGACCTGAT
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41 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1
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42 -------------------------------ATAGAG----------CTTCCTTTAGTTG
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43 CCCCCCTATCTTTATTGTGACGAGGGGACGTTGCCAAAGAGTGACC--TG----------
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44 ----------------AGG---------------
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45 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1
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46 ------------------------------------------------------------
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47 -------TTTTTCAGTTCGCTTAGATGAAGACTTCAGGCAGTATAC--TGCATTTACCAT
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48 ACCTAGTATAAACAATGAG---------------
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49 >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1
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50 ------------------------ATAACCACAGAA-----------------AGCATAG
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51 TAATATGG----------------GGAAAGACTCCTAAATTTAAACTGCCCATACAAAA-
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52 --------------GGAAACAT------------
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53 >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1
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54 ---------------GACCAGCAAAGCACCTCTGGAA----------AGGTGAAGGGGCA
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55 GTAGTAATACAAGATAATAGTGACATAAAAGTAGT-------------------------
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56 ----------------------------------
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57 >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1
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58 ---------------------------------GGAA----------AGGTGAAGGGGCA
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59 GTAGTAATACAAGATAATAGTGACATAACAGTAGTG------------------------
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60 ---------------CGAAGAAGAAAAGCAAA--
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61 >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1
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62 ------------------------------------------------TTTTATGGTTCA
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63 TAATCCACTCCATGTACTGGTTCTTTTAGAATCTCTCATTTTTCT--GCCCGTTCTAGCT
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64 ----------------------------------
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65 >K03455|HIVHXB2CG_3441_3888_1_0_0_0_0_0_5c/1
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66 -------------GAAGCAGAGCTAGAACTGGCAGAA----------AACAGAGAGATTC
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67 TAAAATAACCAGTACATGGAGTGTATTATGACC---------------------------
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68 ----------------------------------
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69 >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1
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70 -------------------------------------------------------CTCTA
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71 GTGTCCATTCATTGTGTGGCTCCCTCTGTGGCCCTTGGTCTTCTTGGGCTTGTTCCATCT
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72 CTCCT-----------------------------
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73 >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1
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74 TGATTTGTTGTGTCAGTTAGGGTGACAACT------------------TTTTGTGTTCCT
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75 CTATTAGTAACATATCCTGCTTTTCCTA--------------------------------
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76 ----------------------------------
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77 >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1
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78 ----------------------------------GAA----------GTCTTGAGTTCTC
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79 TTATTAA------------GTTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCT
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80 TTTTTC----------------------------
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81 >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1
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82 ------------------------------------------------------------
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83 --------------------TTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCT
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84 TTTTTCTTT--ATGGCAAATACTGGAGTATTG--
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85 >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1
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86 ---------------GGGGGGAACAGTGCAGGGGAAA----------GAATAGTAGACAT
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87 AATAGCAACAGACATACAAACTAAAGAATTACAA--------------------------
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88 -------------------------------A--
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89 >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1
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90 ------------------------------------------------------------
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91 ----------------------TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCTC
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92 ATCCTGTCTCCTTGCCACACAATCATCACCTG--