Mercurial > repos > dave > pipelign
comparison test-data/files/NODE_5.aln @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:9a3a2e04f47a |
|---|---|
| 1 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1 | |
| 2 ---------------------------------------------------------TTA | |
| 3 TCAGAAGG----------------AGCCACCCCACAAGATTTAAAC--ACCATGCTACAC | |
| 4 CC-------AGTGGGGGGACATCAAGCAGCCA-- | |
| 5 >K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1 | |
| 6 -----------------------------------------------GTTTTCAGCATTA | |
| 7 TCAGAAGG----------------AGCCACCCCACAAGATTTAAAC--ACCATGCTAAAC | |
| 8 AC-------AGTGGGGGGACAT------------ | |
| 9 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1 | |
| 10 -------------------------------CAGAAGTGATACCCATGTTTTCAGCATTA | |
| 11 TCAGAAGG----------------AGCCACCCCACAAGATTTAAAC--ACCATGCTAAA- | |
| 12 ---------------------------------- | |
| 13 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1 | |
| 14 -------------------------------TGT-------------AACACCTCAGTCA | |
| 15 TTA------CACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCC--CATACATTATTG | |
| 16 TG-------------------------------- | |
| 17 >K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1 | |
| 18 -------------------------------ATG-------------TATG--------- | |
| 19 ------------GGAATTGGCTGAAAGGATACCTTTGGACAGGCCT--GAGTAATGACTG | |
| 20 AGGTGTTACAA---------CTTGTC-------- | |
| 21 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1 | |
| 22 -------------------------------AA--------------GCTTGTGTAATTG | |
| 23 TTAATTTC---TCTGTCCCACTCCATCCAGGTCGTGTGATTCCAAC--TCTGTTCCAG-- | |
| 24 ------------------------AG-------- | |
| 25 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1 | |
| 26 -------------------------------AA--------------AATTTCAAA---- | |
| 27 ------------------------AATTGGGCCTGAAAATCCATAC--AATACTCCAGTA | |
| 28 TT-TGCCATAAAGAAAAAAGACAGTA-------- | |
| 29 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1 | |
| 30 -------------------------------GC--------------CTGCATGGAATGG | |
| 31 ATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGAGAGCCACCT--AGCAATTCA--- | |
| 32 ---------------------------------- | |
| 33 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1 | |
| 34 -------------------------------GTA-------------CTTTCTATAGTGA | |
| 35 ATAGAGTTAGGCAGGTATATTCACCATTATCGTTTGAGACCCACCT--CCCAACCC---- | |
| 36 ---------------------------------- | |
| 37 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1 | |
| 38 -----------------------------------------------------GGT---- | |
| 39 ------------------------GATATGGGCTGATGTACCATTT--GCCCCTGGATGT | |
| 40 TC-TGCACTATAGGGTAATTTTGGCTGACCTGAT | |
| 41 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1 | |
| 42 -------------------------------ATAGAG----------CTTCCTTTAGTTG | |
| 43 CCCCCCTATCTTTATTGTGACGAGGGGACGTTGCCAAAGAGTGACC--TG---------- | |
| 44 ----------------AGG--------------- | |
| 45 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1 | |
| 46 ------------------------------------------------------------ | |
| 47 -------TTTTTCAGTTCGCTTAGATGAAGACTTCAGGCAGTATAC--TGCATTTACCAT | |
| 48 ACCTAGTATAAACAATGAG--------------- | |
| 49 >K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1 | |
| 50 ------------------------ATAACCACAGAA-----------------AGCATAG | |
| 51 TAATATGG----------------GGAAAGACTCCTAAATTTAAACTGCCCATACAAAA- | |
| 52 --------------GGAAACAT------------ | |
| 53 >K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1 | |
| 54 ---------------GACCAGCAAAGCACCTCTGGAA----------AGGTGAAGGGGCA | |
| 55 GTAGTAATACAAGATAATAGTGACATAAAAGTAGT------------------------- | |
| 56 ---------------------------------- | |
| 57 >K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1 | |
| 58 ---------------------------------GGAA----------AGGTGAAGGGGCA | |
| 59 GTAGTAATACAAGATAATAGTGACATAACAGTAGTG------------------------ | |
| 60 ---------------CGAAGAAGAAAAGCAAA-- | |
| 61 >K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1 | |
| 62 ------------------------------------------------TTTTATGGTTCA | |
| 63 TAATCCACTCCATGTACTGGTTCTTTTAGAATCTCTCATTTTTCT--GCCCGTTCTAGCT | |
| 64 ---------------------------------- | |
| 65 >K03455|HIVHXB2CG_3441_3888_1_0_0_0_0_0_5c/1 | |
| 66 -------------GAAGCAGAGCTAGAACTGGCAGAA----------AACAGAGAGATTC | |
| 67 TAAAATAACCAGTACATGGAGTGTATTATGACC--------------------------- | |
| 68 ---------------------------------- | |
| 69 >K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1 | |
| 70 -------------------------------------------------------CTCTA | |
| 71 GTGTCCATTCATTGTGTGGCTCCCTCTGTGGCCCTTGGTCTTCTTGGGCTTGTTCCATCT | |
| 72 CTCCT----------------------------- | |
| 73 >K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1 | |
| 74 TGATTTGTTGTGTCAGTTAGGGTGACAACT------------------TTTTGTGTTCCT | |
| 75 CTATTAGTAACATATCCTGCTTTTCCTA-------------------------------- | |
| 76 ---------------------------------- | |
| 77 >K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1 | |
| 78 ----------------------------------GAA----------GTCTTGAGTTCTC | |
| 79 TTATTAA------------GTTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCT | |
| 80 TTTTTC---------------------------- | |
| 81 >K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1 | |
| 82 ------------------------------------------------------------ | |
| 83 --------------------TTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCT | |
| 84 TTTTTCTTT--ATGGCAAATACTGGAGTATTG-- | |
| 85 >K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1 | |
| 86 ---------------GGGGGGAACAGTGCAGGGGAAA----------GAATAGTAGACAT | |
| 87 AATAGCAACAGACATACAAACTAAAGAATTACAA-------------------------- | |
| 88 -------------------------------A-- | |
| 89 >K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1 | |
| 90 ------------------------------------------------------------ | |
| 91 ----------------------TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCTC | |
| 92 ATCCTGTCTCCTTGCCACACAATCATCACCTG-- |