diff test-data/files/NODE_5.aln @ 0:9a3a2e04f47a draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/files/NODE_5.aln	Mon Jun 10 16:04:10 2019 -0400
@@ -0,0 +1,92 @@
+>K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1
+---------------------------------------------------------TTA
+TCAGAAGG----------------AGCCACCCCACAAGATTTAAAC--ACCATGCTACAC
+CC-------AGTGGGGGGACATCAAGCAGCCA--
+>K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1
+-----------------------------------------------GTTTTCAGCATTA
+TCAGAAGG----------------AGCCACCCCACAAGATTTAAAC--ACCATGCTAAAC
+AC-------AGTGGGGGGACAT------------
+>K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1
+-------------------------------CAGAAGTGATACCCATGTTTTCAGCATTA
+TCAGAAGG----------------AGCCACCCCACAAGATTTAAAC--ACCATGCTAAA-
+----------------------------------
+>K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1
+-------------------------------TGT-------------AACACCTCAGTCA
+TTA------CACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCC--CATACATTATTG
+TG--------------------------------
+>K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1
+-------------------------------ATG-------------TATG---------
+------------GGAATTGGCTGAAAGGATACCTTTGGACAGGCCT--GAGTAATGACTG
+AGGTGTTACAA---------CTTGTC--------
+>K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1
+-------------------------------AA--------------GCTTGTGTAATTG
+TTAATTTC---TCTGTCCCACTCCATCCAGGTCGTGTGATTCCAAC--TCTGTTCCAG--
+------------------------AG--------
+>K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1
+-------------------------------AA--------------AATTTCAAA----
+------------------------AATTGGGCCTGAAAATCCATAC--AATACTCCAGTA
+TT-TGCCATAAAGAAAAAAGACAGTA--------
+>K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1
+-------------------------------GC--------------CTGCATGGAATGG
+ATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGAGAGCCACCT--AGCAATTCA---
+----------------------------------
+>K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1
+-------------------------------GTA-------------CTTTCTATAGTGA
+ATAGAGTTAGGCAGGTATATTCACCATTATCGTTTGAGACCCACCT--CCCAACCC----
+----------------------------------
+>K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1
+-----------------------------------------------------GGT----
+------------------------GATATGGGCTGATGTACCATTT--GCCCCTGGATGT
+TC-TGCACTATAGGGTAATTTTGGCTGACCTGAT
+>K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1
+-------------------------------ATAGAG----------CTTCCTTTAGTTG
+CCCCCCTATCTTTATTGTGACGAGGGGACGTTGCCAAAGAGTGACC--TG----------
+----------------AGG---------------
+>K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1
+------------------------------------------------------------
+-------TTTTTCAGTTCGCTTAGATGAAGACTTCAGGCAGTATAC--TGCATTTACCAT
+ACCTAGTATAAACAATGAG---------------
+>K03455|HIVHXB2CG_3672_4151_0_0_0_1_0_0_27/1
+------------------------ATAACCACAGAA-----------------AGCATAG
+TAATATGG----------------GGAAAGACTCCTAAATTTAAACTGCCCATACAAAA-
+--------------GGAAACAT------------
+>K03455|HIVHXB2CG_4939_5430_1_0_0_0_0_0_49/1
+---------------GACCAGCAAAGCACCTCTGGAA----------AGGTGAAGGGGCA
+GTAGTAATACAAGATAATAGTGACATAAAAGTAGT-------------------------
+----------------------------------
+>K03455|HIVHXB2CG_4957_5462_2_0_0_1_0_0_2e/1
+---------------------------------GGAA----------AGGTGAAGGGGCA
+GTAGTAATACAAGATAATAGTGACATAACAGTAGTG------------------------
+---------------CGAAGAAGAAAAGCAAA--
+>K03455|HIVHXB2CG_3027_3517_0_0_0_6_0_0_53/1
+------------------------------------------------TTTTATGGTTCA
+TAATCCACTCCATGTACTGGTTCTTTTAGAATCTCTCATTTTTCT--GCCCGTTCTAGCT
+----------------------------------
+>K03455|HIVHXB2CG_3441_3888_1_0_0_0_0_0_5c/1
+-------------GAAGCAGAGCTAGAACTGGCAGAA----------AACAGAGAGATTC
+TAAAATAACCAGTACATGGAGTGTATTATGACC---------------------------
+----------------------------------
+>K03455|HIVHXB2CG_5108_5621_3_0_0_2_0_0_23/1
+-------------------------------------------------------CTCTA
+GTGTCCATTCATTGTGTGGCTCCCTCTGTGGCCCTTGGTCTTCTTGGGCTTGTTCCATCT
+CTCCT-----------------------------
+>K03455|HIVHXB2CG_3447_3973_0_0_0_1_0_0_1f/1
+TGATTTGTTGTGTCAGTTAGGGTGACAACT------------------TTTTGTGTTCCT
+CTATTAGTAACATATCCTGCTTTTCCTA--------------------------------
+----------------------------------
+>K03455|HIVHXB2CG_2276_2810_0_0_0_0_0_0_58/1
+----------------------------------GAA----------GTCTTGAGTTCTC
+TTATTAA------------GTTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCT
+TTTTTC----------------------------
+>K03455|HIVHXB2CG_2252_2786_0_0_0_0_0_0_c/1
+------------------------------------------------------------
+--------------------TTCTCTGAAATCTACTAATTTTCTCCATTTAGTACTGTCT
+TTTTTCTTT--ATGGCAAATACTGGAGTATTG--
+>K03455|HIVHXB2CG_4803_5329_1_0_0_2_0_0_1b/1
+---------------GGGGGGAACAGTGCAGGGGAAA----------GAATAGTAGACAT
+AATAGCAACAGACATACAAACTAAAGAATTACAA--------------------------
+-------------------------------A--
+>K03455|HIVHXB2CG_4642_5125_0_0_0_3_0_0_28/1
+------------------------------------------------------------
+----------------------TAAGGTGTTTTACTAAACTTTTCCATGTTGTAATCCTC
+ATCCTGTCTCCTTGCCACACAATCATCACCTG--