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annotate test-data/files/NODE_6.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1
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2 ------------------------------------------------------------
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3 --------------------GATCCTGC-------------ATATAAGCAGCAGCTTTTT
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4 GCCTTT------------ACTGGTTCTCTCTGGTTAGACCAGATCTGAGCCTGGG-----
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5 ------------------
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6 >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1
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7 ------------------------------------------------------------
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8 -------------------CAGATACCT-------------AAATGATCAACAGCTCCTG
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9 GGGATT-------------TGGGGTTGCTCTGGAAAACTCATTTGCACCCCTGCT-----
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10 ------------------
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11 >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1
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12 GTCTGG----------------------------GGCATCAAGCAGCTCCAGG-------
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13 CAAGAATGCTGGCTGTGGAAAGATACCT-------------AAAGGATCAACAGCTCC--
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14 ------------------------------------------------------------
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15 ------------------
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16 >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1
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17 ------------------------------------------------------------
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18 -----------ACAGTAGAAAAATTCCCCTCCACCATTAAAACTGTGGTTACAATATC--
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19 -------------------TGGGTCCCCTCC-------------TGAGGATTGGT-----
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20 ------------------
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21 >K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1
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22 ------------------------------------------------------------
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23 -----------ACAGTAGAAAAATTCCCCTCCACAATTAAAACTGTGGTTACAATTTC--
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24 -------------------TGGGTCCCCTCC-------------TGAGGATTGCT-----
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25 ------------------
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26 >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1
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27 TCCTG----------------------------------------ACTCCAA--------
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28 ----------TACTGTAGGAGATTCCAC-----------------------CAATATT--
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29 -------------------TGAGGGCTTCCCACCCCCTGCGTCCCAGAAGTT--------
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30 ------------------
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31 >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1
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32 --------------------------------------------ATCCTCAT--------
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33 -----GCATCTGTTCTACCATGTCATTTTT-----------CCACATGTTAAAATTTTCT
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34 GT-----------------CACATTTAC---CAATACT----------------------
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35 ------------------
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36 >K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1
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37 --------------------------------------------TT--------------
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38 -------GGTAAATGTGACAGAAAATTTTA-----------ACATGTGGAAAAATGACAT
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39 GG-----------------TAGA---AC---AGATGCA----------------------
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40 TGAGGATATAA-------
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41 >K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1
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42 ------------------------------------------------------------
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43 -------GGTAAATGTGACAGAAAATTTTA-----------ACATGTGGAAAAATGACAT
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44 GG-----------------TAGA---AC---AGATGCA----------------------
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45 TGAGGATATAAT-----C
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46 >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1
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47 ------------------------------------------------------------
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48 ------------------------------------------------TTAAAATTTTCT
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49 GT-----------------CACATTTAC---CAATACTACTTCTTGTGGGTTGGGGTCTG
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50 TGGGTACACAGGCATGTG
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51 >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1
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52 ------------------------------------------------------------
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53 ------CACCCATCCAAAGGAATTGAGGTT-----------CTTT---CTGATGTTTTTT
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54 GT-----------------CTGGTGTGG---TAAGTCCCCACCTCGACAG----------
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55 ------------------
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56 >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1
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57 CTTTA----------------------------------TATTTTTTCTTAC--------
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58 -----CCCCTGGCCTTAACCGAATTTTTTC-----------CCATCGATCTAATTCTCC-
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59 -------------------CCCGCTTAA--------------------------------
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60 ------------------
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61 >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1
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62 TCC------------------------------------CTGTTCG--------------
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63 -------GGCGCCACTGCTAGAGATTTTCC-----------ACACTGACTAAAAGGGTCT
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64 GA-----------------GGGA---TCTCTAGTTACC----------------------
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65 ------------------
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66 >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1
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67 ----------------------------------AGTAAGTAGTACCTGTAAC--GCAAC
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68 CTATACCAATAG-TAGCAATAGTAGCATTA-----------GTAGTAGCACTAATAAT--
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69 ------------------------------------------------------------
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70 ------------------
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71 >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1
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72 --------------------------------------------------------CAAC
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73 CTATACCAATAG-TAGCAATAGTAGCATTA-----------GTAGTAGCAATAATAATAG
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74 CAATAG------------TTGAGTGGTC--------------------------------
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75 ------------CA----
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76 >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1
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77 ACAGTAA----TTGGAG--------------AGCAATGGCTAGTGATTTTAACCTGCCAC
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78 CTGTAGTAGCAA-AAGAAATAGTAGCCCG-------------------------------
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79 ------------------------------------------------------------
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80 ------------------
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81 >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1
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82 ------------------------------------------------------------
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83 -TATGGTACCAGTTAGAGAAAGAACCCCTA-----------GTAGGAGCAGAAACCTTCT
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84 ATGTAG------------ATGGGGCAGC--------------------------------
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85 ------------TAACAG
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86 >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1
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87 -------------------------------------AGTTCATGTATCCAGT-------
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88 ---GGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGGCTGAAACAGCATAT---
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89 ------------------------------------------------------------
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90 ------------------
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91 >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1
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92 ATTGTACACATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGT-------
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93 ---GGATATATAGAAGCAGA----------------------------------------
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94 ------------------------------------------------------------
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95 ------------------
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96 >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1
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97 ------------------------------------------------------------
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98 ------TATAAAGACGCAGAAGTTATTCCAGCATACACAGGGCAGGAAACAGCATATTTT
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99 CTTTT--------------CAAATTAG-----------------------------CAG-
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100 ------------------
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101 >K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1
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102 ------------------------------------------------------------
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103 ------TGCTAA-----------------------------TTTTAAAAGACAATATTCT
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104 GTTTC--------------CTGCCCTGTTTCTGCTGGAATAACTTCTGCTTCTATATAT-
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105 ------------------
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106 >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1
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107 ------------------------------------------------------------
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108 ------GCCA---CAGAGGGAGCCACACAA-----------TGAATGGACACTATAGCTT
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109 TTAGAG--GAGCTTAAGAATGAAGCTGTTA------------------------------
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110 ---GA-------------
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111 >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1
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112 ------------------------------------------------------------
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113 ------CC--------------CCATAT---------------------TACTATGCTTT
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114 CTGTGGTTAATTTTTGCACTGCCTCTGTTAATTGTTTTACATCATTAG------------
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115 --TGT-------------
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116 >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1
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117 ------------------------------------------------------------
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118 --------------CAGAGGAGGTCTCT--------------------------------
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119 --------CGACGCAGGACTCGGCTTGCTGAAGGGCGCACGGCAAGAGGCGAGGGGCGG-
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120 CGACT-------------
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121 >K03455|HIVHXB2CG_667_1161_0_0_0_1_0_0_37/1
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122 ------------------------------------------------------------
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123 --------GGAAACCAGAGGAGCTCTCT--------------------------------
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124 --------CGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCG--
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125 ------------------
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126 >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1
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127 ------------------------------------------------------------
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128 ------TAGGAACCAAAGAAAGATAGTT--------------------------------
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129 --------AAGTGTTTCAATTGTGGCACAGAAGGGCACACAGCCAGAAATTGCAGG----
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130 ------------------