Mercurial > repos > dave > pipelign
view test-data/files/NODE_6.aln @ 0:9a3a2e04f47a draft default tip
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| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
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>K03455|HIVHXB2CG_418_930_3_0_0_1_0_0_14/1 ------------------------------------------------------------ --------------------GATCCTGC-------------ATATAAGCAGCAGCTTTTT GCCTTT------------ACTGGTTCTCTCTGGTTAGACCAGATCTGAGCCTGGG----- ------------------ >K03455|HIVHXB2CG_7976_8475_3_0_0_1_0_0_61/1 ------------------------------------------------------------ -------------------CAGATACCT-------------AAATGATCAACAGCTCCTG GGGATT-------------TGGGGTTGCTCTGGAAAACTCATTTGCACCCCTGCT----- ------------------ >K03455|HIVHXB2CG_7932_8405_1_0_0_1_0_0_17/1 GTCTGG----------------------------GGCATCAAGCAGCTCCAGG------- CAAGAATGCTGGCTGTGGAAAGATACCT-------------AAAGGATCAACAGCTCC-- ------------------------------------------------------------ ------------------ >K03455|HIVHXB2CG_6869_7379_1_0_0_3_0_1_11/1 ------------------------------------------------------------ -----------ACAGTAGAAAAATTCCCCTCCACCATTAAAACTGTGGTTACAATATC-- -------------------TGGGTCCCCTCC-------------TGAGGATTGGT----- ------------------ >K03455|HIVHXB2CG_6865_7379_1_0_0_0_0_1_4d/1 ------------------------------------------------------------ -----------ACAGTAGAAAAATTCCCCTCCACAATTAAAACTGTGGTTACAATTTC-- -------------------TGGGTCCCCTCC-------------TGAGGATTGCT----- ------------------ >K03455|HIVHXB2CG_8069_8641_1_0_0_0_0_0_38/1 TCCTG----------------------------------------ACTCCAA-------- ----------TACTGTAGGAGATTCCAC-----------------------CAATATT-- -------------------TGAGGGCTTCCCACCCCCTGCGTCCCAGAAGTT-------- ------------------ >K03455|HIVHXB2CG_6040_6545_1_0_0_0_0_0_2/1 --------------------------------------------ATCCTCAT-------- -----GCATCTGTTCTACCATGTCATTTTT-----------CCACATGTTAAAATTTTCT GT-----------------CACATTTAC---CAATACT---------------------- ------------------ >K03455|HIVHXB2CG_6480_6947_0_0_0_2_0_0_32/1 --------------------------------------------TT-------------- -------GGTAAATGTGACAGAAAATTTTA-----------ACATGTGGAAAAATGACAT GG-----------------TAGA---AC---AGATGCA---------------------- TGAGGATATAA------- >K03455|HIVHXB2CG_6482_6962_0_0_0_1_0_0_35/1 ------------------------------------------------------------ -------GGTAAATGTGACAGAAAATTTTA-----------ACATGTGGAAAAATGACAT GG-----------------TAGA---AC---AGATGCA---------------------- TGAGGATATAAT-----C >K03455|HIVHXB2CG_5990_6505_1_0_0_0_0_0_3f/1 ------------------------------------------------------------ ------------------------------------------------TTAAAATTTTCT GT-----------------CACATTTAC---CAATACTACTTCTTGTGGGTTGGGGTCTG TGGGTACACAGGCATGTG >K03455|HIVHXB2CG_2700_3243_0_0_0_3_1_0_51/1 ------------------------------------------------------------ ------CACCCATCCAAAGGAATTGAGGTT-----------CTTT---CTGATGTTTTTT GT-----------------CTGGTGTGG---TAAGTCCCCACCTCGACAG---------- ------------------ >K03455|HIVHXB2CG_313_880_0_0_0_2_0_0_54/1 CTTTA----------------------------------TATTTTTTCTTAC-------- -----CCCCTGGCCTTAACCGAATTTTTTC-----------CCATCGATCTAATTCTCC- -------------------CCCGCTTAA-------------------------------- ------------------ >K03455|HIVHXB2CG_121_652_1_0_0_0_0_0_5f/1 TCC------------------------------------CTGTTCG-------------- -------GGCGCCACTGCTAGAGATTTTCC-----------ACACTGACTAAAAGGGTCT GA-----------------GGGA---TCTCTAGTTACC---------------------- ------------------ >K03455|HIVHXB2CG_6045_6577_2_0_0_1_0_0_47/1 ----------------------------------AGTAAGTAGTACCTGTAAC--GCAAC CTATACCAATAG-TAGCAATAGTAGCATTA-----------GTAGTAGCACTAATAAT-- ------------------------------------------------------------ ------------------ >K03455|HIVHXB2CG_6065_6509_1_0_0_1_0_0_3a/1 --------------------------------------------------------CAAC CTATACCAATAG-TAGCAATAGTAGCATTA-----------GTAGTAGCAATAATAATAG CAATAG------------TTGAGTGGTC-------------------------------- ------------CA---- >K03455|HIVHXB2CG_4276_4897_1_0_0_1_0_0_3d/1 ACAGTAA----TTGGAG--------------AGCAATGGCTAGTGATTTTAACCTGCCAC CTGTAGTAGCAA-AAGAAATAGTAGCCCG------------------------------- ------------------------------------------------------------ ------------------ >K03455|HIVHXB2CG_3823_4361_1_0_0_0_0_0_30/1 ------------------------------------------------------------ -TATGGTACCAGTTAGAGAAAGAACCCCTA-----------GTAGGAGCAGAAACCTTCT ATGTAG------------ATGGGGCAGC-------------------------------- ------------TAACAG >K03455|HIVHXB2CG_4457_4958_4_0_0_0_0_0_44/1 -------------------------------------AGTTCATGTATCCAGT------- ---GGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGGCTGAAACAGCATAT--- ------------------------------------------------------------ ------------------ >K03455|HIVHXB2CG_4420_4903_1_0_0_1_0_0_31/1 ATTGTACACATTTAGAATGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGT------- ---GGATATATAGAAGCAGA---------------------------------------- ------------------------------------------------------------ ------------------ >K03455|HIVHXB2CG_4476_4938_5_0_0_3_0_0_2b/1 ------------------------------------------------------------ ------TATAAAGACGCAGAAGTTATTCCAGCATACACAGGGCAGGAAACAGCATATTTT CTTTT--------------CAAATTAG-----------------------------CAG- ------------------ >K03455|HIVHXB2CG_4053_4544_2_0_0_2_0_0_52/1 ------------------------------------------------------------ ------TGCTAA-----------------------------TTTTAAAAGACAATATTCT GTTTC--------------CTGCCCTGTTTCTGCTGGAATAACTTCTGCTTCTATATAT- ------------------ >K03455|HIVHXB2CG_5585_6024_1_0_0_0_0_0_60/1 ------------------------------------------------------------ ------GCCA---CAGAGGGAGCCACACAA-----------TGAATGGACACTATAGCTT TTAGAG--GAGCTTAAGAATGAAGCTGTTA------------------------------ ---GA------------- >K03455|HIVHXB2CG_3199_3700_2_0_0_1_0_0_4a/1 ------------------------------------------------------------ ------CC--------------CCATAT---------------------TACTATGCTTT CTGTGGTTAATTTTTGCACTGCCTCTGTTAATTGTTTTACATCATTAG------------ --TGT------------- >K03455|HIVHXB2CG_673_1207_2_0_0_2_0_0_16/1 ------------------------------------------------------------ --------------CAGAGGAGGTCTCT-------------------------------- --------CGACGCAGGACTCGGCTTGCTGAAGGGCGCACGGCAAGAGGCGAGGGGCGG- CGACT------------- >K03455|HIVHXB2CG_667_1161_0_0_0_1_0_0_37/1 ------------------------------------------------------------ --------GGAAACCAGAGGAGCTCTCT-------------------------------- --------CGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCG-- ------------------ >K03455|HIVHXB2CG_1938_2460_2_0_0_0_0_0_55/1 ------------------------------------------------------------ ------TAGGAACCAAAGAAAGATAGTT-------------------------------- --------AAGTGTTTCAATTGTGGCACAGAAGGGCACACAGCCAGAAATTGCAGG---- ------------------