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annotate test-data/files/NODE_51.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1
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2 CGGGCACAC----------------------------ACT--------ACTTGAAGCACT
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3 CAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTCCCTAG--TTAGC------------
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4 -------------------------------------
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5 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1
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6 -------------------------------------------------CTTGAAGCACT
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7 CAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAG--TTAGCCAGA--------
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8 ----------------------------GAGCTCCCA
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9 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1
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10 ---------------------------------------------TGCTGCTGGCTCAGC
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11 TCGTCT---CATTCATTCCCTTACAGTAGGCCATCCAATCACACTACATATT--------
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12 -------------------------------GACCAC
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13 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1
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14 GCTGCTCCC----------------------------ACCCTATCTTGTGCTGGCTCAGC
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15 TCGTCT---CATTGTTTCCCTTACAGTAGGCCATCCAATCA-------------------
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16 -------------------------------------
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17 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1
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18 ------------------------------------------------TCCTCTGTCGAG
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19 TAACGC---CTATTCTGCTATGACGACACCCAATTCTGAAA--CTGGATAAA--------
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20 --------------------------CAGCAGTTGTT
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21 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1
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22 ------------------------------------------------------------
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23 --------------------TGCCAAGGATCCGTTCACTAA--TCGAATGGA-----TCT
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24 GTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT
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25 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1
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26 ------------------------------------------------TTCTGGGAAGTT
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27 CAAT----------------TAGGAATACCACATCCCGCAGGGTTAAAAAAG-----AAA
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28 AAATCAGT------------------AACAGTACTGG
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29 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1
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30 ------------------------------------------------CTATG------T
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31 TTAC----------------TTCTAATCCCGAATCCTGCAAAGCTAGATAAATTGCTTGT
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32 AACTCAGTC-----------------TTCTGATTTGT
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33 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1
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34 C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGA
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35 CAAG----ATATCCTTGATC----------------------------------------
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36 -------------------------------------
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37 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1
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38 ------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTGCCAAAGAAGA
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39 CAAG----ATATCCTTGATCTGAGGA----------------------------------
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40 -------------------------------------
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41 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1
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42 -------------------------------------GGCTAATTCACTCCCAACGAAGA
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43 CAAG----ATATCCTTGATCTGTGGATGTACCACCCACAAG-------------------
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44 ---------------------------GCTACTTCCC
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45 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1
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46 ---------------------ACAACGGAATTGG---AGGAAATGAACCAGTAGATAAAT
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47 TAGT----CAGTGCTGGAATCAGGAAAGTACTATTTTT----------------------
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48 -------------------------------------
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49 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1
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50 -----------------------AATAGTACTTT---CCTGATTCCAGCACTGACTAAAT
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51 TATC----TACTTGTTCATTTCCTCCAATTCCTTTGTGTG--------------------
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52 -------------------------------------
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53 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1
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54 -----------------GAAGAAGCGGAGACAGC---GACGAAGAGCTCATCAGAACAGT
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55 CAGA----CTCATCAAGCTTCTCAATCAAATCAG--------------------------
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56 -------------------------------------
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57 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1
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58 --------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCTCATCAGAACAGT
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59 CAGA----CTCATCAAGCTTCTGTA-----------------------------------
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60 -------------------------------------
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61 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1
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62 -----------------------------ACAGC---GACGAAGAGCTCATCAGAACAGA
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63 CAGA----CTCATCAAGCTTCTCTATCAAAGCAGTAAGTA--------------------
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64 ----------------------------TTACAT---