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annotate test-data/files/NODE_39.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1
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2 AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC----
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3 -----AGGAAGCAACCACCACTCTATT-----------------------TTGTGCATC-
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4 -------------------------------------------------
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5 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1
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6 AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT----
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7 -----AGCCAGTAGATCCTAGACTAT-------------------------AGCCCTGG-
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8 -------------------------------------------------
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9 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1
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10 --------------------------------------GGAGCT----AGAACGAT----
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11 -----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGG
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12 A------------------------------------------------
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13 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1
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14 ----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC
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15 TTGTGGGGCTGTTGGCTCTGGTCTGCT---------------------------------
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16 -------------------------------------------------
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17 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1
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18 TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC
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19 TGGTGGGGCAGTTGGCTCTGGTC-------------------------------------
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20 -------------------------------------------------
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21 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1
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22 A-------------------------------------GGGATTATGGAAAACAGA----
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23 -----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGGATTAGAACATGG----
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24 -------------------------------------------------
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25 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1
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26 ------------CGGGCACAC----------------------------ACT--------
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27 ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTCCCTAG--TTAGC
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28 -------------------------------------------------
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29 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1
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30 ------------------------------------------------------------
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31 -CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAG--TTAGC
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32 CAGA------------------------------------GAGCTCCCA
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33 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1
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34 ---------------------------------------------------------TGC
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35 TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCCATCCAATCACACTACA
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36 TATT---------------------------------------GACCAC
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37 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1
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38 ------------GCTGCTCCC----------------------------ACCCTATCTTG
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39 TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCCATCCAATCA-------
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40 -------------------------------------------------
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41 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1
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42 ------------------------------------------------------------
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43 TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCAATTCTGAAA--CTGGA
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44 TAAA----------------------------------CAGCAGTTGTT
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45 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1
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46 ------------------------------------------------------------
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47 --------------------------------TGCCAAGGATCCGTTCACTAA--TCGAA
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48 TGGA-----TCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT
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49 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1
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50 ------------------------------------------------------------
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51 TTCTGGGAAGTTCAAT----------------TAGGAATACCACATCCCGCAGGGTTAAA
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52 AAAG-----AAAAAATCAGT------------------AACAGTACTGG
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53 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1
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54 ------------------------------------------------------------
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55 CTATG------TTTAC----------------TTCTAATCCCGAATCCTGCAAAGCTAGA
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56 TAAATTGCTTGTAACTCAGTC-----------------TTCTGATTTGT
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57 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1
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58 ------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
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59 TCCCAAAGAAGACAAG----ATATCCTTGATC----------------------------
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60 -------------------------------------------------
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61 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1
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62 ------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC
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63 TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA----------------------
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64 -------------------------------------------------
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65 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1
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66 -------------------------------------------------GGCTAATTCAC
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67 TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACCACCCACAAG-------
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68 ---------------------------------------GCTACTTCCC
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69 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1
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70 ---------------------------------ACAACGGAATTGG---AGGAAATGAAC
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71 CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACTATTTTT----------
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72 -------------------------------------------------
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73 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1
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74 -----------------------------------AATAGTACTTT---CCTGATTCCAG
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75 CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCCTTTGTGTG--------
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76 -------------------------------------------------
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77 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1
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78 -----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT
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79 CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATCAG--------------
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80 -------------------------------------------------
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81 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1
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82 --------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT
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83 CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA-----------------------
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84 -------------------------------------------------
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85 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1
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86 -----------------------------------------ACAGC---GACGAAGAGCT
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87 CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGCAGTAAGTA--------
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88 ----------------------------------------TTACAT---