Mercurial > repos > dave > pipelign
comparison test-data/files/NODE_39.aln @ 0:9a3a2e04f47a draft default tip
Uploaded
| author | dave |
|---|---|
| date | Mon, 10 Jun 2019 16:04:10 -0400 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:9a3a2e04f47a |
|---|---|
| 1 >K03455|HIVHXB2CG_6322_6838_1_0_0_0_1_0_63/1 | |
| 2 AATTG----TGGGTCACAGTCT---------ATTATGGGGTACC----TGTGTGGC---- | |
| 3 -----AGGAAGCAACCACCACTCTATT-----------------------TTGTGCATC- | |
| 4 ------------------------------------------------- | |
| 5 >K03455|HIVHXB2CG_5794_6187_2_0_0_0_0_0_5b/1 | |
| 6 AGCAGA--ATAGGCGTTACTCG---------ACAGAGGAGAGCA----AGAAATGT---- | |
| 7 -----AGCCAGTAGATCCTAGACTAT-------------------------AGCCCTGG- | |
| 8 ------------------------------------------------- | |
| 9 >K03455|HIVHXB2CG_906_1404_1_0_0_3_0_0_45/1 | |
| 10 --------------------------------------GGAGCT----AGAACGAT---- | |
| 11 -----TCGCAGTTAATCCTGGCGTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGG | |
| 12 A------------------------------------------------ | |
| 13 >K03455|HIVHXB2CG_1667_2209_4_0_0_2_0_0_2a/1 | |
| 14 ----GAGGGGGAGTTGTTGTCT---------GTACCCCAGACCT----GAAGCTCTCTTC | |
| 15 TTGTGGGGCTGTTGGCTCTGGTCTGCT--------------------------------- | |
| 16 ------------------------------------------------- | |
| 17 >K03455|HIVHXB2CG_1644_2213_4_0_0_3_0_0_4f/1 | |
| 18 TTCTGAGGGGGAGATGTTGTCT---------CTAGCCCAGACCT----GAAGCTCTCTTC | |
| 19 TGGTGGGGCAGTTGGCTCTGGTC------------------------------------- | |
| 20 ------------------------------------------------- | |
| 21 >K03455|HIVHXB2CG_5034_5548_1_0_0_4_0_0_13/1 | |
| 22 A-------------------------------------GGGATTATGGAAAACAGA---- | |
| 23 -----TGGCAGGTGATGATTGTGTGGCAATTAGACAGGATGAGGATTAGAACATGG---- | |
| 24 ------------------------------------------------- | |
| 25 >K03455|HIVHXB2CG_9174_9651_1_0_0_0_0_0_4e/1 | |
| 26 ------------CGGGCACAC----------------------------ACT-------- | |
| 27 ACTTGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTCCCTAG--TTAGC | |
| 28 ------------------------------------------------- | |
| 29 >K03455|HIVHXB2CG_9142_9638_2_0_0_2_0_0_3c/1 | |
| 30 ------------------------------------------------------------ | |
| 31 -CTTGAAGCACTCAAGGCAAGCTTTATTGCGGCTTAATCAGTGGGTTCCCTAG--TTAGC | |
| 32 CAGA------------------------------------GAGCTCCCA | |
| 33 >K03455|HIVHXB2CG_8231_8877_0_0_0_3_0_0_25/1 | |
| 34 ---------------------------------------------------------TGC | |
| 35 TGCTGGCTCAGCTCGTCT---CATTCATTCCCTTACAGTAGGCCATCCAATCACACTACA | |
| 36 TATT---------------------------------------GACCAC | |
| 37 >K03455|HIVHXB2CG_8446_8894_4_0_0_3_0_0_10/1 | |
| 38 ------------GCTGCTCCC----------------------------ACCCTATCTTG | |
| 39 TGCTGGCTCAGCTCGTCT---CATTGTTTCCCTTACAGTAGGCCATCCAATCA------- | |
| 40 ------------------------------------------------- | |
| 41 >K03455|HIVHXB2CG_5329_5821_2_0_0_2_0_0_43/1 | |
| 42 ------------------------------------------------------------ | |
| 43 TCCTCTGTCGAGTAACGC---CTATTCTGCTATGACGACACCCAATTCTGAAA--CTGGA | |
| 44 TAAA----------------------------------CAGCAGTTGTT | |
| 45 >K03455|HIVHXB2CG_7972_8486_1_0_0_0_0_0_e/1 | |
| 46 ------------------------------------------------------------ | |
| 47 --------------------------------TGCCAAGGATCCGTTCACTAA--TCGAA | |
| 48 TGGA-----TCTGTCTCTGTCTCTCTCTCCACCTTCTTCTTCTATTCCT | |
| 49 >K03455|HIVHXB2CG_2808_3255_0_0_0_1_0_0_22/1 | |
| 50 ------------------------------------------------------------ | |
| 51 TTCTGGGAAGTTCAAT----------------TAGGAATACCACATCCCGCAGGGTTAAA | |
| 52 AAAG-----AAAAAATCAGT------------------AACAGTACTGG | |
| 53 >K03455|HIVHXB2CG_3580_4035_1_0_0_0_0_0_3/1 | |
| 54 ------------------------------------------------------------ | |
| 55 CTATG------TTTAC----------------TTCTAATCCCGAATCCTGCAAAGCTAGA | |
| 56 TAAATTGCTTGTAACTCAGTC-----------------TTCTGATTTGT | |
| 57 >K03455|HIVHXB2CG_9061_9383_1_0_0_4_0_0_3b/1 | |
| 58 ------------C------ACTTATTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC | |
| 59 TCCCAAAGAAGACAAG----ATATCCTTGATC---------------------------- | |
| 60 ------------------------------------------------- | |
| 61 >K03455|HIVHXB2CG_9067_9580_2_0_0_1_0_0_4c/1 | |
| 62 ------------------------TTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCAC | |
| 63 TGCCAAAGAAGACAAG----ATATCCTTGATCTGAGGA---------------------- | |
| 64 ------------------------------------------------- | |
| 65 >K03455|HIVHXB2CG_7_537_2_0_0_1_0_0_1e/1 | |
| 66 -------------------------------------------------GGCTAATTCAC | |
| 67 TCCCAACGAAGACAAG----ATATCCTTGATCTGTGGATGTACCACCCACAAG------- | |
| 68 ---------------------------------------GCTACTTCCC | |
| 69 >K03455|HIVHXB2CG_4165_4569_2_0_0_3_0_0_8/1 | |
| 70 ---------------------------------ACAACGGAATTGG---AGGAAATGAAC | |
| 71 CAGTAGATAAATTAGT----CAGTGCTGGAATCAGGAAAGTACTATTTTT---------- | |
| 72 ------------------------------------------------- | |
| 73 >K03455|HIVHXB2CG_3703_4231_2_0_0_1_0_0_62/1 | |
| 74 -----------------------------------AATAGTACTTT---CCTGATTCCAG | |
| 75 CACTGACTAAATTATC----TACTTGTTCATTTCCTCCAATTCCTTTGTGTG-------- | |
| 76 ------------------------------------------------- | |
| 77 >K03455|HIVHXB2CG_5977_6467_2_0_0_2_0_0_1/1 | |
| 78 -----------------------------GAAGAAGCGGAGACAGC---GACGAAGAGCT | |
| 79 CATCAGAACAGTCAGA----CTCATCAAGCTTCTCAATCAAATCAG-------------- | |
| 80 ------------------------------------------------- | |
| 81 >K03455|HIVHXB2CG_5968_6386_1_0_0_1_0_0_d/1 | |
| 82 --------------------CTATGGCAGGAAGAAGCGGAGACAGC---GACGAAGAGCT | |
| 83 CATCAGAACAGTCAGA----CTCATCAAGCTTCTGTA----------------------- | |
| 84 ------------------------------------------------- | |
| 85 >K03455|HIVHXB2CG_5989_6545_2_0_0_1_0_0_19/1 | |
| 86 -----------------------------------------ACAGC---GACGAAGAGCT | |
| 87 CATCAGAACAGACAGA----CTCATCAAGCTTCTCTATCAAAGCAGTAAGTA-------- | |
| 88 ----------------------------------------TTACAT--- |