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annotate test-data/files/NODE_18.aln @ 0:9a3a2e04f47a draft default tip

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author dave
date Mon, 10 Jun 2019 16:04:10 -0400
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1 >K03455|HIVHXB2CG_1312_1798_2_0_0_1_0_0_a/1
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2 --------------------------TTATCAGAAGG----------------AGCCACC
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3 CCACAAGATTTAAACACCATGCTACACCC-------AGTGGGGGGACATCAAGCAGCCA-
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4 -
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5 >K03455|HIVHXB2CG_1302_1790_0_0_0_1_0_0_1c/1
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6 ----------------GTTTTCAGCATTATCAGAAGG----------------AGCCACC
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7 CCACAAGATTTAAACACCATGCTAAACAC-------AGTGGGGGGACAT-----------
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8 -
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9 >K03455|HIVHXB2CG_1286_1769_0_0_0_4_0_0_0/1
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10 CAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGG----------------AGCCACC
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11 CCACAAGATTTAAACACCATGCTAAA----------------------------------
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12 -
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13 >K03455|HIVHXB2CG_6810_7300_0_0_0_0_0_0_2d/1
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14 TGT-------------AACACCTCAGTCATTA------CACAGGCCTGTCCAAAGGTATC
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15 CTTTGAGCCAATTCCCATACATTATTGTG-------------------------------
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16 -
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17 >K03455|HIVHXB2CG_6323_6872_1_0_0_2_0_0_50/1
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18 ATG-------------TATG---------------------GGAATTGGCTGAAAGGATA
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19 CCTTTGGACAGGCCTGAGTAATGACTGAGGTGTTACAA---------CTTGTC-------
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20 -
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21 >K03455|HIVHXB2CG_7609_8146_1_0_0_1_0_0_5e/1
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22 AA--------------GCTTGTGTAATTGTTAATTTC---TCTGTCCCACTCCATCCAGG
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23 TCGTGTGATTCCAACTCTGTTCCAG--------------------------AG-------
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24 -
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25 >K03455|HIVHXB2CG_2685_3250_0_0_0_0_0_0_46/1
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26 AA--------------AATTTCAAA----------------------------AATTGGG
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27 CCTGAAAATCCATACAATACTCCAGTATT-TGCCATAAAGAAAAAAGACAGTA-------
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28 -
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29 >K03455|HIVHXB2CG_217_724_2_1_0_2_0_0_36/1
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30 GC--------------CTGCATGGAATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAG
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31 GTTTGAGAGCCACCTAGCAATTCA------------------------------------
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32 -
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33 >K03455|HIVHXB2CG_8325_8818_2_0_0_2_0_0_15/1
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34 GTA-------------CTTTCTATAGTGAATAGAGTTAGGCAGGTATATTCACCATTATC
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35 GTTTGAGACCCACCTCCCAACCC-------------------------------------
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36 -
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37 >K03455|HIVHXB2CG_756_1235_2_0_0_1_0_0_34/1
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38 ----------------------GGT----------------------------GATATGG
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39 GCTGATGTACCATTTGCCCCTGGATGTTC-TGCACTATAGGGTAATTTTGGCTGACCTGA
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40 T
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41 >K03455|HIVHXB2CG_1835_2322_3_0_0_1_0_0_57/1
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42 ATAGAG----------CTTCCTTTAGTTGCCCCCCTATCTTTATTGTGACGAGGGGACGT
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43 TGCCAAAGAGTGACCTG--------------------------AGG--------------
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44 -
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45 >K03455|HIVHXB2CG_2894_3537_2_0_0_0_0_0_18/1
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46 ------------------------------------TTTTTCAGTTCGCTTAGATGAAGA
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47 CTTCAGGCAGTATACTGCATTTACCATACCTAGTATAAACAATGAG--------------
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48 -