Mercurial > repos > da-intersect > testdavid
changeset 1:1321822ee8bc draft
Uploaded
| author | da-intersect |
|---|---|
| date | Tue, 25 Jun 2013 20:44:37 -0400 |
| parents | 14625331d665 |
| children | 0442b1c31ef2 |
| files | mrf.xml |
| diffstat | 1 files changed, 32 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mrf.xml Tue Jun 25 20:44:37 2013 -0400 @@ -0,0 +1,32 @@ +<tool id="MRF" name="MRF" version="0.2.0"> + <description>MRF</description> + <command interpreter="python"> mrf.py -f $configfile -o "$cluster" "$resulttxt" "$morphology" "$histogram" + </command> + <requirements> + <requirement type="binary">MRF</requirement> + </requirements> + <inputs> + <param name="posfile" type="data" label="First POS filename" help="Select the POS file your have uploaded" format="pos" /> + <param name="range" type="data" label="Range" help="Select the range file you have uploaded" format="rng" /> + <param name="neighbours" size="2" type="integer" value="2" label="Nearest neighbours" help="How many nearest neighbours (kNN >= 1)?" /> + <param name="rmaxnm" size="20" type="text" value="1.0" label="Maximum radius" help="What maximum radius (r_max nm) should the kNN be within (r_max > 0.0)?" /> + <param name="solute" size="20" type="text" value="2 1 0" label="Solute elements" help="List of the solute elements, seperate by a space and ending with 0" /> + <param name="morpho_min" size="2" type="text" value="2" label="Morphology Cluster size min" help="Minimum cluster size for the morphology file (min 2)" /> + <param name="morpho_max" size="2" type="text" value="999999" label="Morphology Cluster size max" help="Maximum cluster size for the morphology file (max 999999)" /> + <param name="cluster_min" size="6" type="text" value="2" label="Cluster size min" help="Minimum cluster size for the cluster file" /> + <param name="cluster_max" size="6" type="text" value="999999" label="Cluster size max" help="Maximum cluster size for the cluster file (max 999999)" /> + </inputs> + <outputs> + <data name="cluster" format="pos" /> + <data name="resulttxt" format="txt" /> + <data name="morphology" format="txt" /> + <data name="histogram" format="txt" /> + </outputs> + <configfiles> + <configfile name="configfile"> + $posfile $range $neighbours $rmaxnm $solute 1 1 $morpho_min $morpho_max 1 $cluster_min $cluster_max + </configfile> + </configfiles> + <help> + </help> +</tool>