# HG changeset patch
# User da-intersect
# Date 1372207477 14400
# Node ID 1321822ee8bc8f210c80fc0492bcbb924c3cffcf
# Parent  14625331d665a3e30ea1f6d1ed5273574da3a1b9
Uploaded

diff -r 14625331d665 -r 1321822ee8bc mrf.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mrf.xml	Tue Jun 25 20:44:37 2013 -0400
@@ -0,0 +1,32 @@
+<tool id="MRF" name="MRF" version="0.2.0">
+  <description>MRF</description>
+  <command interpreter="python"> mrf.py -f $configfile -o "$cluster" "$resulttxt" "$morphology" "$histogram"
+  </command>
+  <requirements>
+    <requirement type="binary">MRF</requirement>
+  </requirements> 
+ <inputs>
+    <param name="posfile" type="data" label="First POS filename" help="Select the POS file your have uploaded" format="pos" />
+    <param name="range" type="data" label="Range" help="Select the range file you have uploaded" format="rng" />
+	<param name="neighbours" size="2" type="integer" value="2" label="Nearest neighbours" help="How many nearest neighbours (kNN >= 1)?" />
+	<param name="rmaxnm" size="20" type="text" value="1.0" label="Maximum radius" help="What maximum radius (r_max nm) should the kNN be within (r_max > 0.0)?" />
+	<param name="solute" size="20" type="text" value="2 1 0" label="Solute elements" help="List of the solute elements, seperate by a space and ending with 0" />
+	<param name="morpho_min" size="2" type="text" value="2" label="Morphology Cluster size min" help="Minimum cluster size for the morphology file (min 2)" />
+	<param name="morpho_max" size="2" type="text" value="999999" label="Morphology Cluster size max" help="Maximum cluster size for the morphology file (max 999999)" />
+	<param name="cluster_min" size="6" type="text" value="2" label="Cluster size min" help="Minimum cluster size for the cluster file" />
+	<param name="cluster_max" size="6" type="text" value="999999" label="Cluster size max" help="Maximum cluster size for the cluster file (max 999999)" />
+  </inputs>
+  <outputs>
+    <data name="cluster" format="pos" />
+    <data name="resulttxt" format="txt" />
+    <data name="morphology" format="txt" />
+    <data name="histogram" format="txt" />
+  </outputs>
+  <configfiles>
+  <configfile name="configfile">
+ $posfile $range $neighbours $rmaxnm $solute 1 1 $morpho_min $morpho_max 1 $cluster_min $cluster_max 
+ </configfile>
+  </configfiles>
+  <help>
+  </help>
+</tool>