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changeset 32:ceedaa33286e

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Another test for diginorm
author Michael R. Crusoe <mcrusoe@msu.edu>
date Sun, 29 Jun 2014 17:35:17 -0400
parents 00a6437ee54b
children d067ee282412
files normalize-by-median.xml test-data/test-abund-read-paired.fa
diffstat 2 files changed, 26 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/normalize-by-median.xml	Sun Jun 29 17:30:43 2014 -0400
+++ b/normalize-by-median.xml	Sun Jun 29 17:35:17 2014 -0400
@@ -158,6 +158,20 @@
 				</discover_dataset>
 			</output>
 		</test>
+		<test>
+			<param name="inputs" value="test-abund-read-paired.fa" />
+			<param name="cutoff" value="1" />
+			<param name="ksize" value="17" />
+			<param name="paired" value="true" />
+			<output name="output">
+				<discover_dataset name="test-abund-read-paired.fa.keep">
+					<assert_contents>
+						<has_line_matching expression="GGTTGACGGGGCTCAGGGGG" />
+						<has_line_matching expression="GGTTGACGGGGCTCAGGG" />
+					</assert_contents>
+				</discover_dataset>
+			</output>
+		</test>
 
 	</tests>
     
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test-abund-read-paired.fa	Sun Jun 29 17:35:17 2014 -0400
@@ -0,0 +1,12 @@
+>895:1:37:17593:9954/1
+GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG
+>895:1:37:17593:9954/2
+GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG
+>895:1:37:17593:9954/1
+GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG
+>895:1:37:17593:9954/2
+GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG
+>895:1:37:17593:9954/1
+GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG
+>895:1:37:17593:9954/2
+GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG