# HG changeset patch
# User Michael R. Crusoe <mcrusoe@msu.edu>
# Date 1404077717 14400
# Node ID ceedaa33286e01408694b660f84d549f960bebdb
# Parent  00a6437ee54b25f9111b82e0ff9306dc300bb53a
Another test for diginorm

diff -r 00a6437ee54b -r ceedaa33286e normalize-by-median.xml
--- a/normalize-by-median.xml	Sun Jun 29 17:30:43 2014 -0400
+++ b/normalize-by-median.xml	Sun Jun 29 17:35:17 2014 -0400
@@ -158,6 +158,20 @@
 				</discover_dataset>
 			</output>
 		</test>
+		<test>
+			<param name="inputs" value="test-abund-read-paired.fa" />
+			<param name="cutoff" value="1" />
+			<param name="ksize" value="17" />
+			<param name="paired" value="true" />
+			<output name="output">
+				<discover_dataset name="test-abund-read-paired.fa.keep">
+					<assert_contents>
+						<has_line_matching expression="GGTTGACGGGGCTCAGGGGG" />
+						<has_line_matching expression="GGTTGACGGGGCTCAGGG" />
+					</assert_contents>
+				</discover_dataset>
+			</output>
+		</test>
 
 	</tests>
     
diff -r 00a6437ee54b -r ceedaa33286e test-data/test-abund-read-paired.fa
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/test-abund-read-paired.fa	Sun Jun 29 17:35:17 2014 -0400
@@ -0,0 +1,12 @@
+>895:1:37:17593:9954/1
+GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG
+>895:1:37:17593:9954/2
+GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG
+>895:1:37:17593:9954/1
+GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG
+>895:1:37:17593:9954/2
+GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG
+>895:1:37:17593:9954/1
+GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG
+>895:1:37:17593:9954/2
+GGTTGACGGGGCTCAGGGGGCGGCTGACTCCGAGAGACAGCAGCCGCAGCTGTCGTCAGGGGATTTCCGGGGCGGAGGCCGCAGACGCGAGTGGTGGAGGGAGAAGGCCTGACG