Mercurial > repos > crusoe > khmer
changeset 47:96da0e8a98e4
Fix diginorm output; filter-abund cheetah error
| author | Michael R. Crusoe <mcrusoe@msu.edu> |
|---|---|
| date | Sat, 12 Jul 2014 15:16:01 -0400 |
| parents | 471f3e085664 |
| children | bcd19db01a6b |
| files | filter-abund.xml macros.xml normalize-by-median.xml |
| diffstat | 3 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/filter-abund.xml Sat Jul 12 12:10:02 2014 -0400 +++ b/filter-abund.xml Sat Jul 12 15:16:01 2014 -0400 @@ -17,7 +17,7 @@ @BINARY@ #if $cutoff != 2 --cutoff=$cutoff -#fi +#end if $variable_coverage @THREADS@ $countingtable_to_load
--- a/macros.xml Sat Jul 12 12:10:02 2014 -0400 +++ b/macros.xml Sat Jul 12 15:16:01 2014 -0400 @@ -107,7 +107,7 @@ </data> </xml> <xml name="output_sequences_single"> - <data name="output sequences" + <data name="output" format="input" label="${tool.name} processed nucleotide sequence file" /> </xml>
--- a/normalize-by-median.xml Sat Jul 12 12:10:02 2014 -0400 +++ b/normalize-by-median.xml Sat Jul 12 15:16:01 2014 -0400 @@ -67,7 +67,7 @@ <outputs> <data name="countingtable" format="ct" - label="${tool.name} k-mer counting table from #echo ', '.join(map(str, $inputs ))#"> + label="${tool.name} k-mer counting table"> <filter>save_countingtable == True</filter> </data> <!-- <expand macro="output_sequences" /> -->