# HG changeset patch
# User Michael R. Crusoe <mcrusoe@msu.edu>
# Date 1405192561 14400
# Node ID 96da0e8a98e457957a720686cf6832b0c51e7fbb
# Parent  471f3e085664e97d74170837b9e29efa6f542f62
Fix diginorm output; filter-abund cheetah error

diff -r 471f3e085664 -r 96da0e8a98e4 filter-abund.xml
--- a/filter-abund.xml	Sat Jul 12 12:10:02 2014 -0400
+++ b/filter-abund.xml	Sat Jul 12 15:16:01 2014 -0400
@@ -17,7 +17,7 @@
 @BINARY@
 #if $cutoff != 2
   --cutoff=$cutoff
-#fi
+#end if
 $variable_coverage
 @THREADS@
 $countingtable_to_load
diff -r 471f3e085664 -r 96da0e8a98e4 macros.xml
--- a/macros.xml	Sat Jul 12 12:10:02 2014 -0400
+++ b/macros.xml	Sat Jul 12 15:16:01 2014 -0400
@@ -107,7 +107,7 @@
                 </data>
 	</xml>
 	<xml name="output_sequences_single">
-                <data   name="output sequences"
+                <data   name="output"
                         format="input"
                         label="${tool.name} processed nucleotide sequence file" />
 	</xml>
diff -r 471f3e085664 -r 96da0e8a98e4 normalize-by-median.xml
--- a/normalize-by-median.xml	Sat Jul 12 12:10:02 2014 -0400
+++ b/normalize-by-median.xml	Sat Jul 12 15:16:01 2014 -0400
@@ -67,7 +67,7 @@
 	<outputs>
 		<data	name="countingtable"
 			format="ct"
-			label="${tool.name} k-mer counting table from  #echo ', '.join(map(str, $inputs ))#">
+			label="${tool.name} k-mer counting table">
 			<filter>save_countingtable == True</filter>
 		</data>
 		<!-- <expand macro="output_sequences" /> -->