Mercurial > repos > chrisw > monorail_test

changeset 24:d16b3dc144d8 draft

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Uploaded
author chrisw
date Thu, 14 Nov 2019 06:09:46 +0000
parents 7f26c88a86d7
children d780661251a1
files monorail.xml
diffstat 1 files changed, 2 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/monorail.xml	Thu Nov 14 06:01:46 2019 +0000
+++ b/monorail.xml	Thu Nov 14 06:09:46 2019 +0000
@@ -34,7 +34,7 @@
                             compressed=1
                         #end if
                     #end if
-                    ref="$refGenomeSource.genomeDir.fields.path"
+                    ref="$index_source.fields.path"
                     output="."
                     temp="./tmp"
     ]]></command>
@@ -69,14 +69,12 @@
         -->
 
  <!-- Genome source. -->
-        <conditional name="refGenomeSource">
-                        <param name="genomeDir" type="select" label="Select reference genome index set" help="If your genome of interest is not listed, contact the Galaxy team">
+                        <param name="index_source" type="select" label="Select reference genome index set" help="If your genome of interest is not listed, contact the Galaxy team">
                             <options from_data_table="rnastar_index2_versioned">
                                 <filter type="sort_by" column="2" />
                                 <validator type="no_options" message="No indexes are available for the selected input dataset"/>
                             </options>
                         </param>
-        </conditional>
     </inputs>
     <outputs>
         <data format="txt" name="auc" label="${tool.name} on ${on_string}: AUC" from_work_dir="bamcount_auc.tsv"/>