# HG changeset patch
# User chrisw
# Date 1573711786 0
# Node ID d16b3dc144d8103bd812c85a8b73f28ddf287f46
# Parent  7f26c88a86d7f2d948c44aef57b248ae11a19e41
Uploaded

diff -r 7f26c88a86d7 -r d16b3dc144d8 monorail.xml
--- a/monorail.xml	Thu Nov 14 06:01:46 2019 +0000
+++ b/monorail.xml	Thu Nov 14 06:09:46 2019 +0000
@@ -34,7 +34,7 @@
                             compressed=1
                         #end if
                     #end if
-                    ref="$refGenomeSource.genomeDir.fields.path"
+                    ref="$index_source.fields.path"
                     output="."
                     temp="./tmp"
     ]]></command>
@@ -69,14 +69,12 @@
         -->
 
  <!-- Genome source. -->
-        <conditional name="refGenomeSource">
-                        <param name="genomeDir" type="select" label="Select reference genome index set" help="If your genome of interest is not listed, contact the Galaxy team">
+                        <param name="index_source" type="select" label="Select reference genome index set" help="If your genome of interest is not listed, contact the Galaxy team">
                             <options from_data_table="rnastar_index2_versioned">
                                 <filter type="sort_by" column="2" />
                                 <validator type="no_options" message="No indexes are available for the selected input dataset"/>
                             </options>
                         </param>
-        </conditional>
     </inputs>
     <outputs>
         <data format="txt" name="auc" label="${tool.name} on ${on_string}: AUC" from_work_dir="bamcount_auc.tsv"/>