Mercurial > repos > chrisw > monorail_test

changeset 28:05bfd9cc7082 draft

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Uploaded
author chrisw
date Thu, 14 Nov 2019 06:54:20 +0000
parents 35b20f54c985
children 1fa8901c209f
files monorail.xml tool_data_table_conf.xml.sample
diffstat 2 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/monorail.xml	Thu Nov 14 06:23:21 2019 +0000
+++ b/monorail.xml	Thu Nov 14 06:54:20 2019 +0000
@@ -35,7 +35,8 @@
                         #end if
                     #end if
                     ref="$index_source.fields.path"
-                    exon_bed="$index_source.fields.exons_path"
+                    exon_bed="$index_source.fields.path/$index_source.fields.dbkey/gtf/exons.bed"
+                    genome="$index_source.fields.dbkey"
                     output="."
                     temp="./tmp"
     ]]></command>
--- a/tool_data_table_conf.xml.sample	Thu Nov 14 06:23:21 2019 +0000
+++ b/tool_data_table_conf.xml.sample	Thu Nov 14 06:54:20 2019 +0000
@@ -1,5 +1,5 @@
 <tables>
-    <table name="monorail_index" comment_char="#">
+    <table name="monorail_dummy_index" comment_char="#">
         <columns>value, dbkey, name, path</columns>
         <file path="tool-data/monorail_index.loc" />
     </table>