Mercurial > repos > chrisw > data_manager_monorail_index_fetcher
changeset 21:179527791fab draft
Uploaded
| author | chrisw |
|---|---|
| date | Thu, 14 Nov 2019 02:45:57 +0000 |
| parents | 166451f0ac6a |
| children | f7a05c747a44 |
| files | data_manager_monorail_index/data_manager/data_manager.py data_manager_monorail_index/data_manager_conf.xml |
| diffstat | 2 files changed, 5 insertions(+), 2 deletions(-) [+] |
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--- a/data_manager_monorail_index/data_manager/data_manager.py Thu Nov 14 02:28:00 2019 +0000 +++ b/data_manager_monorail_index/data_manager/data_manager.py Thu Nov 14 02:45:57 2019 +0000 @@ -27,6 +27,8 @@ ref = url_comps[-1] version = url_comps[-2] data_manager_entry['dbkey'] = ref.lower() + data_manager_entry['value'] = ref.lower() + data_manager_entry['name'] = ref.upper() jsonin = open(args.config).read() params = json.loads(jsonin) #target_directory = params['output_data'][0]['extra_files_path']
--- a/data_manager_monorail_index/data_manager_conf.xml Thu Nov 14 02:28:00 2019 +0000 +++ b/data_manager_monorail_index/data_manager_conf.xml Thu Nov 14 02:45:57 2019 +0000 @@ -4,14 +4,15 @@ <data_table name="monorail_index"> <output> <column name="value"/> + <column name="name"/> <column name="dbkey"/> <column name="version"/> <column name="path" output_ref="out_file"> <move relative_symlinks="True" type="directory"> <!-- no need to set source, gets taken from out_dir.extra_files_path --> - <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">monorail/${version}/${dbkey}</target> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">monorail/${version}</target> </move> - <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/monorail/${version}/${dbkey}</value_translation> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/monorail/${version}<value_translation> <value_translation type="function">abspath</value_translation> </column> <column name="exons_path">