view snp_caller.xml @ 0:0fd352f62446 draft default tip

planemo upload for repository https://github.com/ChrisD11/Duplicon commit 3ee0594c692faac542ffa58f4339d79b9b8aefbd-dirty

<tool id="snp_caller" name="Identify Snips" version="0.1.0">
  <description>for single-end or paired-end data</description>
  <command>$__tool_directory__/snp -amr_fp $amr_fp -samse $samse -out_fp $out_fp</command>
  <inputs>
    <param format="fasta" name="amr_fp" type="data" label="Input fasta file"/>
    <param format="sam" name ="samse" type="data" label="Input SAM file"/>
  </inputs>
  <outputs>
    <data format="tabular" name="out_fp" />
  </outputs>

<tests>
  <test>
    <param name="amr_fp" value="amr.fa" />
    <param name="samse" value="samse.sam" />
    <param name="out_fp" file="res" />
  </test>
</tests>
  <help>
This tool identifies single nucleotide polymorphisms from both single-end and paired-end data.
  </help>

</tool>