Mercurial > repos > chrisd > snipfinder
changeset 10:cbf16dc35d4b draft
planemo upload for repository https://github.com/cdeanj/galaxytools/tree/master/tools/snpfinder commit 5a3797bea4c457f2ecbdbe28c429bc2083fa4151-dirty
| author | chrisd |
|---|---|
| date | Tue, 08 Mar 2016 01:08:14 -0500 |
| parents | 6cf3cccd1891 |
| children | 36c529ebd81a |
| files | variant_caller.xml |
| diffstat | 1 files changed, 5 insertions(+), 1 deletions(-) [+] |
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--- a/variant_caller.xml Tue Mar 08 00:28:01 2016 -0500 +++ b/variant_caller.xml Tue Mar 08 01:08:14 2016 -0500 @@ -1,5 +1,5 @@ <tool id="snp_caller" name="Snip Finder" version="0.1.0"> - <description> Identifies snips for both single-end and paired-end data</description> + <description>Identifies snips for both single-end and paired-end data</description> <requirements> <requirement type="package" version="0.1">snp_caller</requirement> </requirements> @@ -54,9 +54,13 @@ </tests> <help><![CDATA[ This program parses a SAM file and looks for single nucleotide polymorphisms (SNPs). In single-end mode, only alignments with bit four not set are considered. In paired-end mode, only reads that mapped in a proper pair are considered. When filtering on unique alignments, only alignments with the XT:A:U field are considered. + Program: snpfinder + Contact: Chris Dean <cdean11@rams.colostate.edu> + Usage: snp [options] + Options: -amr_fp amr database path -samse single-end sam file path