Mercurial > repos > charles_s_test > seqsero2
view test.txt @ 7:3d6680af0bec draft
planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
author | charles_s_test |
---|---|
date | Mon, 27 Nov 2017 16:30:27 -0500 |
parents | 38ad1130d077 |
children | b04931a9fe71 |
line wrap: on
line source
monkey /galaxydir/galaxy/tools/GalaxySeqsero/run_seqsero.py /galaxydir/galaxy/database/files/000/dataset_1.dat,/galaxydir/galaxy/database/files/000/dataset_2.dat /galaxydir/galaxy/tools/GalaxySeqsero/ 3 /galaxydir/galaxy/tools/GalaxySeqsero/run_seqsero.py /galaxydir/galaxy/database/files/000/dataset_1.dat,/galaxydir/galaxy/database/files/000/dataset_2.dat /galaxydir/galaxy/tools/GalaxySeqsero/ 3 2 ('\n', '\n') Input files: dataset_1_SRR1198853.fastq dataset_2_SRR1198853.fastq O antigen prediction: O-? H1 antigen prediction(fliC): k H2 antigen prediction(fljB): 1,5 Predicted antigenic profile: ?:k:1,5 Predicted serotype(s): N/A (The predicted antigenic profile does not exist in the White-Kauffmann-Le Minor scheme) check fastq id and make them in accordance with each other...please wait... Result: None Mon Nov 27 16:25:00 2017