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planemo upload commit a4fb57231f274270afbfebd47f67df05babffa4a-dirty
author charles_s_test
date Thu, 30 Nov 2017 16:58:25 -0500
parents 0fdf26c5e805
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monkey /galaxydir/galaxy/tools/GalaxySeqsero/run_seqsero.py	/galaxydir/galaxy/database/files/000/dataset_170.dat,/galaxydir/galaxy/database/files/000/dataset_171.dat	/galaxydir/galaxy/tools/GalaxySeqsero/
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/galaxydir/galaxy/tools/GalaxySeqsero/run_seqsero.py	/galaxydir/galaxy/database/files/000/dataset_170.dat,/galaxydir/galaxy/database/files/000/dataset_171.dat	/galaxydir/galaxy/tools/GalaxySeqsero/
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Input files:	dataset_170_SRR6325381.fastq dataset_171_SRR6325381.fastq
O antigen prediction:	O-3,10
H1 antigen prediction(fliC):	e,h
H2 antigen prediction(fljB):	1,6
Predicted antigenic profile:	3,10:e,h:1,6
Predicted serotype(s):	Anatum
The serotype(s) is/are the only serotype(s) with the indicated antigenic profile currently recognized in the Kauffmann White Scheme.  New serotypes can emerge and the possibility exists that this antigenic profile may emerge in a different subspecies.  Identification of strains to the subspecies level should accompany serotype determination; the same antigenic profile in different subspecies is considered different serotypes.
check fastq id and make them in accordance with each other...please wait...



Result:


None
Wed Nov 29 16:27:29 2017