Mercurial > repos > bzonnedda > conifer2

changeset 13:09ef072c4070 draft

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Uploaded
author bzonnedda
date Tue, 21 Feb 2017 06:03:27 -0500
parents dd24e1e47bbb
children a899c18be1f6
files c_calls.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/c_calls.xml	Mon Feb 20 06:57:07 2017 -0500
+++ b/c_calls.xml	Tue Feb 21 06:03:27 2017 -0500
@@ -1,7 +1,7 @@
 <tool id="conifer_call" name="CoNIFER CNVs caller" version="1.0">
   <description></description>
-  <command interpreter="python">
-       conifer.py call
+  <command>
+       python \$CONIFER_PATH/conifer.py call
 	--input $input
 	--output temporary
     --threshold $threshold