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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="R" version="3.1.2">
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1
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4 <repository toolshed="https://testtoolshed.g2.bx.psu.edu/" name="brenninc_r_sept32105" owner="brenninc" changeset_revision="3ab867976871" prior_installation_required="True" />
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5 </package>
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6 <package name="R_extend_level_one" version="0.0.1">
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7 <install version="1.0">
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8 <actions>
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9 <action type="setup_r_environment">
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1
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10 <repository changeset_revision="3ab867976871" name="brenninc_r_sept32105" owner="brenninc" toolshed="https://testtoolshed.g2.bx.psu.edu/">
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0
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11 <package name="R" version="3.1.2" />
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12 <!-- includes base, boot,
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13 class, cluster, codetools, compiler,
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14 datasets,
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15 foreign,
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16 graphics, grDevices, grid,
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17 KernSmooth,
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18 lattice,
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19 MASS, Matrix, methods, mgcv,
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20 nlme, nnet,
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21 parallel,
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22 rpart,
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23 spatial, splines, stats, stats4, survival,
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24 tcltk, tools,
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25 utils-->
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26
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27 </repository>
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28 <!--No dependencies Not on https://bioarchive.galaxyproject.org -->
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29 <package>https://cran.r-project.org/src/contrib/acepack_1.3-3.3.tar.gz</package>
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30 <package>https://cran.r-project.org/src/contrib/colorspace_1.2-6.tar.gz</package>
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31 <!-- Imports graphics
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32 Suggests: KernSmooth, MASS, kernlab, mvtnorm, vcd, dichromat, tcltk-->
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33 <package>https://cran.r-project.org/src/contrib/digest_0.6.8.tar.gz</package>
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34 <package>https://cran.r-project.org/src/contrib/dichromat_2.0-0.tar.gz</package>
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35 <!-- Depends stats -->
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36 <package>https://cran.r-project.org/src/contrib/Formula_1.2-1.tar.gz</package>
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37 <!-- Depends stats -->
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38 <package>https://cran.r-project.org/src/contrib/gtable_0.1.2.tar.gz</package>
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39 <!-- Depends grid
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40 Suggests: testthat, plyr-->
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41 <package>https://cran.r-project.org/src/contrib/labeling_0.3.tar.gz</package>
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42 <package>https://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz</package>
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43 <!-- Suggests: testthat, knitr -->
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44 <package>https://cran.r-project.org/src/contrib/proto_0.3-10.tar.gz</package>
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45 <!-- Suggests: graph, Rgraphviz -->
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46 <package>https://cran.r-project.org/src/contrib/Rcpp_0.12.0.tar.gz</package>
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47 <!-- Imports: methods, utils
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48 Suggests: RUnit, inline, rbenchmark, highlight, pkgKitten (≥ 0.1.2) -->
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49 <package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
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50 <package>https://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package>
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51 <package>https://cran.r-project.org/src/contrib/snow_0.3-13.tar.gz</package>
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52 <!-- Depends: R (≥ 2.12.1), utils
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53 Suggests: Rmpi, rpvm, rlecuyer, rsprng, nws -->
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54 <package>https://cran.r-project.org/src/contrib/SparseM_1.7.tar.gz</package>
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55 <!-- Depends: R (≥ 2.15), methods
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56 Imports: graphics, stats, utils -->
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57 <package>https://cran.r-project.org/src/contrib/stringi_0.5-5.tar.gz</package>
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58 <!-- Depends: R (≥ 2.13.1)
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59 Imports: tools, utils, stats -->
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60 <package>https://cran.r-project.org/src/contrib/XML_3.98-1.3.tar.gz</package>
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61 <!-- Depends: R (≥ 2.13.0), methods, utils
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62 Suggests: bitops, RCurl -->
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63 <package>https://cran.r-project.org/src/contrib/xtable_1.7-4.tar.gz</package>
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64 <package>https://cran.r-project.org/src/contrib/stringr_1.0.0.tar.gz</package>
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65 <!-- Depends: R (≥ 2.14)
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66 Imports: stringi (≥ 0.4.1), magrittr
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67 Suggests: testthat, knitr -->
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68 </action>
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69 </actions>
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70 </install>
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71 </package>
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72 </tool_dependency>
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73
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74
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