diff tool_dependencies.xml @ 0:d03274c7c546 draft

Uploaded
author brenninc
date Thu, 01 Oct 2015 05:23:19 -0400
parents
children 110f8e93a946
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Oct 01 05:23:19 2015 -0400
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+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="R" version="3.1.2">
+        <repository toolshed="http://l-unxx4770.it.manchester.ac.uk:9009/" name="package_r_3_1_2" owner="brenninc" changeset_revision="6c7b9b5dfcae" prior_installation_required="True" />
+    </package>
+    <package name="R_extend_level_one" version="0.0.1">
+        <install version="1.0">
+            <actions>
+                <action type="setup_r_environment">
+                    <repository changeset_revision="6c7b9b5dfcae" name="package_r_3_1_2" owner="brenninc" toolshed="http://l-unxx4770.it.manchester.ac.uk:9009/">
+                        <package name="R" version="3.1.2" />
+                        <!-- includes base, boot, 
+                                      class, cluster, codetools, compiler, 
+                                      datasets, 
+                                      foreign, 
+                                      graphics, grDevices, grid, 
+                                      KernSmooth, 
+                                      lattice, 
+                                      MASS, Matrix, methods, mgcv, 
+                                      nlme, nnet, 
+                                      parallel, 
+                                      rpart,
+                                      spatial, splines, stats, stats4, survival,
+                                      tcltk, tools,
+                                      utils-->
+
+                    </repository>  
+                    <!--No dependencies Not on https://bioarchive.galaxyproject.org -->
+                    <package>https://cran.r-project.org/src/contrib/acepack_1.3-3.3.tar.gz</package> 
+                    <package>https://cran.r-project.org/src/contrib/colorspace_1.2-6.tar.gz</package> 
+                        <!-- Imports graphics 
+                             Suggests: KernSmooth, MASS, kernlab, mvtnorm, vcd, dichromat, tcltk-->
+                    <package>https://cran.r-project.org/src/contrib/digest_0.6.8.tar.gz</package> 
+                    <package>https://cran.r-project.org/src/contrib/dichromat_2.0-0.tar.gz</package> 
+                        <!-- Depends stats -->
+                    <package>https://cran.r-project.org/src/contrib/Formula_1.2-1.tar.gz</package> 
+                        <!-- Depends stats -->
+                    <package>https://cran.r-project.org/src/contrib/gtable_0.1.2.tar.gz</package> 
+                        <!-- Depends grid 
+                             Suggests: testthat, plyr-->
+                    <package>https://cran.r-project.org/src/contrib/labeling_0.3.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz</package>
+                        <!-- Suggests: 	testthat, knitr -->
+                    <package>https://cran.r-project.org/src/contrib/proto_0.3-10.tar.gz</package>
+                        <!-- Suggests: 	graph, Rgraphviz -->
+                    <package>https://cran.r-project.org/src/contrib/Rcpp_0.12.0.tar.gz</package>
+                        <!-- Imports: 	methods, utils
+                             Suggests: 	RUnit, inline, rbenchmark, highlight, pkgKitten (≥ 0.1.2) -->
+                    <package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/rjson_0.2.15.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/snow_0.3-13.tar.gz</package>
+                        <!-- Depends: R (≥ 2.12.1), utils
+                             Suggests: Rmpi, rpvm, rlecuyer, rsprng, nws -->
+                    <package>https://cran.r-project.org/src/contrib/SparseM_1.7.tar.gz</package>
+                        <!-- Depends: R (≥ 2.15), methods
+                             Imports: graphics, stats, utils -->
+                    <package>https://cran.r-project.org/src/contrib/stringi_0.5-5.tar.gz</package>
+                        <!-- Depends: R (≥ 2.13.1)
+                             Imports: tools, utils, stats -->
+                    <package>https://cran.r-project.org/src/contrib/XML_3.98-1.3.tar.gz</package>
+                        <!-- Depends: R (≥ 2.13.0), methods, utils
+                             Suggests: bitops, RCurl -->
+                    <package>https://cran.r-project.org/src/contrib/xtable_1.7-4.tar.gz</package>
+                    <package>https://cran.r-project.org/src/contrib/stringr_1.0.0.tar.gz</package>
+                        <!-- Depends: R (≥ 2.14)
+                             Imports: stringi (≥ 0.4.1), magrittr
+                             Suggests: testthat, knitr -->
+                </action>            
+            </actions>
+        </install>
+    </package>
+</tool_dependency>
+
+