Mercurial > repos > bonsai > crac
changeset 6:9fe9c48f5970 draft
Uploaded
| author | bonsai |
|---|---|
| date | Fri, 13 Sep 2013 10:47:23 -0400 |
| parents | 46d61dc5c92e |
| children | 87874e4511be |
| files | crac.xml |
| diffstat | 1 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/crac.xml Fri Sep 13 10:45:26 2013 -0400 +++ b/crac.xml Fri Sep 13 10:47:23 2013 -0400 @@ -1,5 +1,5 @@ <?xml version="1.0" encoding="utf-8"?> -<tool id="crac" name="CRAC" version="1.0"> +<tool id="crac" name="CRAC" version="1.3.0"> <requirements> <requirement type='package' version="1.3.0">crac</requirement> </requirements> @@ -61,13 +61,13 @@ <param name="input" format="txt,raw,fastq" type="data" label="Reads File" help="Select a file"/> - <param name="kmer_length" type="integer" min="12" max="32" value="21" label="k-mer length"> + <param name="kmer_length" type="integer" min="12" max="32" value="22" label="k-mer length"> <help>k-mer length must be carefully chosen. A k-mer of that length must map to a unique location in the genome with a high probability. Recommended value for the human genome: 22</help> </param> <param name="read_length" type="integer" label="Read length" value="0" help="Set read length when all reads have the same length to dramatically increase computation speed. Default value (no read length considered) : 0. Note : If read length is set, shorter reads will be ignored, longer reads will be cut."/> - <param name="detailed_sam" type="select" label="Do you want a detailed sam output file ?" help="Detailed sam output file gives you information on the SNPs, Splice junctions, Sequencing errors, Chimeras, ..." > - <option value="no"> No, I do not want detailed sam output file </option> - <option value="yes"> Yes, I want detailed sam output file </option> + <param name="detailed_sam" type="select" label="Do you want a detailed sam output file ?" help="Detailed sam output file gives you information on the SNPs, splice junctions, sequencing errors, chimeras, ..." > + <option value="no"> No, I don't want a detailed SAM output file </option> + <option value="yes"> Yes, I want a detailed SAM output file </option> <when value="yes"/> <!-- Supress warnings--> <when value="no"/> <!-- Supress warnings--> </param>