# HG changeset patch
# User bonsai
# Date 1379083643 14400
# Node ID 9fe9c48f59704398afaf4b4ef9929a73c170fb33
# Parent  46d61dc5c92ec3a0d3847ad746755fabd4d8731e
Uploaded

diff -r 46d61dc5c92e -r 9fe9c48f5970 crac.xml
--- a/crac.xml	Fri Sep 13 10:45:26 2013 -0400
+++ b/crac.xml	Fri Sep 13 10:47:23 2013 -0400
@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="utf-8"?>
-<tool id="crac" name="CRAC" version="1.0">
+<tool id="crac" name="CRAC" version="1.3.0">
   <requirements>
     <requirement type='package' version="1.3.0">crac</requirement>
   </requirements>
@@ -61,13 +61,13 @@
 
 
       <param name="input" format="txt,raw,fastq" type="data" label="Reads File" help="Select a file"/>   
-      <param name="kmer_length" type="integer" min="12" max="32" value="21" label="k-mer length"> 
+      <param name="kmer_length" type="integer" min="12" max="32" value="22" label="k-mer length"> 
          <help>k-mer length must be carefully chosen. A k-mer of that length must map to a unique location in the genome with a high probability. Recommended value for the human genome: 22</help>  
       </param> 
       <param name="read_length" type="integer" label="Read length" value="0" help="Set read length when all reads have the same length to dramatically increase computation speed. Default value (no read length considered) : 0. Note : If read length is set, shorter reads will be ignored, longer reads will be cut."/>
-      <param name="detailed_sam" type="select" label="Do you want a detailed sam output file ?" help="Detailed sam output file gives you information on the SNPs, Splice junctions, Sequencing errors, Chimeras, ..." >
-         <option value="no"> No, I do not want detailed sam output file </option>
-         <option value="yes"> Yes, I want detailed sam output file </option>
+      <param name="detailed_sam" type="select" label="Do you want a detailed sam output file ?" help="Detailed sam output file gives you information on the SNPs, splice junctions, sequencing errors, chimeras, ..." >
+         <option value="no"> No, I don't want a detailed SAM output file </option>
+         <option value="yes"> Yes, I want a detailed SAM output file </option>
          <when value="yes"/>				<!-- Supress warnings-->
          <when value="no"/>				<!-- Supress warnings-->
       </param>