Mercurial > repos > blankenberg > data_manager_sam_fa_index_builder
view data_manager_conf.xml @ 4:926e50397b83 default tip
Add abspath value translation to data_manager_conf.xml.
author | Daniel Blankenberg <dan@bx.psu.edu> |
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date | Tue, 04 Jun 2013 14:57:33 -0400 |
parents | 2c5dc42b31b6 |
children |
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<?xml version="1.0"?> <data_managers> <data_manager tool_file="data_manager/data_manager_sam_fa_index_builder.xml" id="sam_fa_index_builder" version="0.0.1"> <data_table name="sam_fa_indexes"> <output> <column name="line_type" /> <column name="value" /> <column name="path" output_ref="out_file" > <move type="directory" relativize_symlinks="True"> <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/sam_index/${value}</target> </move> <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/sam_index/${value}/${path}</value_translation> <value_translation type="function">abspath</value_translation> </column> </output> </data_table> </data_manager> </data_managers>