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Add abspath value translation to data_manager_conf.xml.
author Daniel Blankenberg <dan@bx.psu.edu>
date Tue, 04 Jun 2013 14:57:33 -0400
parents 2c5dc42b31b6
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1 <?xml version="1.0"?>
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2 <data_managers>
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4 <data_manager tool_file="data_manager/data_manager_sam_fa_index_builder.xml" id="sam_fa_index_builder" version="0.0.1">
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5 <data_table name="sam_fa_indexes">
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6 <output>
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7 <column name="line_type" />
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8 <column name="value" />
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9 <column name="path" output_ref="out_file" >
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10 <move type="directory" relativize_symlinks="True">
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11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
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12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/sam_index/${value}</target>
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13 </move>
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14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/sam_index/${value}/${path}</value_translation>
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926e50397b83 Add abspath value translation to data_manager_conf.xml.
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15 <value_translation type="function">abspath</value_translation>
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16 </column>
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17 </output>
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18 </data_table>
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19 </data_manager>
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21 </data_managers>