Mercurial > repos > biomonika > monika_mpileup
changeset 6:8ad6592481a0 draft
Deleted selected files
| author | biomonika |
|---|---|
| date | Wed, 13 Aug 2014 16:10:43 -0400 |
| parents | 2d4d5dc187db |
| children | cef2d8f2057d |
| files | LINKYX_mpileup_wrapper.sh LINKYX_mpileup_wrapper.xml |
| diffstat | 2 files changed, 0 insertions(+), 27 deletions(-) [+] |
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--- a/LINKYX_mpileup_wrapper.sh Wed Aug 13 16:02:50 2014 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ -#!/bin/bash -results=$1; -bam_file=$2; -reference=$3; - -samtools mpileup -uf $reference $2 >results; \ No newline at end of file
--- a/LINKYX_mpileup_wrapper.xml Wed Aug 13 16:02:50 2014 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,21 +0,0 @@ -<tool id="LINKYX_mpileup" name="LINKYX_mpileup"> - 2 <description>Run mpileup with LINKYX-specific parameters</description> - 3 <command interpreter="bash">LINKYX_mpileup_wrapper.sh $output $input $input1</command> - 4 <inputs> - 5 <param format="bam" name="input" type="data" label="Alignment file"/> - <param format="fasta" name="input1" type="data" label="Reference file"/> - 6 </inputs> - 7 <outputs> - 8 <data format="tabular" name="output" /> - 9 </outputs> - 10 - 11 <tests> - 12 <test> - 15 </test> - 16 </tests> - 17 - 18 <help> - 19 This tool tests if primers are present in gorilla female or on human Y or chimp Y chromosome. - 20 </help> - 21 - 22 </tool> \ No newline at end of file