Mercurial > repos > biomonika > monika_mpileup

changeset 5:2d4d5dc187db draft

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Uploaded
author biomonika
date Wed, 13 Aug 2014 16:02:50 -0400
parents e2aa2a93f8fe
children 8ad6592481a0
files LINKYX_mpileup_wrapper.xml
diffstat 1 files changed, 21 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/LINKYX_mpileup_wrapper.xml	Wed Aug 13 16:02:50 2014 -0400
@@ -0,0 +1,21 @@
+<tool id="LINKYX_mpileup" name="LINKYX_mpileup">
+   2   <description>Run mpileup with LINKYX-specific parameters</description>
+   3   <command interpreter="bash">LINKYX_mpileup_wrapper.sh $output $input $input1</command>
+   4   <inputs>
+   5     <param format="bam" name="input" type="data" label="Alignment file"/>
+         <param format="fasta" name="input1" type="data" label="Reference file"/>
+   6   </inputs>
+   7   <outputs>
+   8     <data format="tabular" name="output" />
+   9   </outputs>
+  10 
+  11   <tests>
+  12     <test>
+  15     </test>
+  16   </tests>
+  17 
+  18   <help>
+  19 This tool tests if primers are present in gorilla female or on human Y or chimp Y chromosome.
+  20   </help>
+  21 
+  22 </tool>
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